FFCP PHASE1:Hg19::chr20:401500..401515,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:401500..401515,+ | |||
|coexpression_cluster_id=C184 | |||
|description=CAGE_peak_at_chr20:401500..401515,+ | |description=CAGE_peak_at_chr20:401500..401515,+ | ||
|id=chr20:401500..401515,+ | |id=chr20:401500..401515,+ | ||
|ontology_enrichment_celltype=CL:0002150!2.36e-09!3;CL:0000861!2.36e-09!3 | |ontology_enrichment_celltype=CL:0002150!2.36e-09!3;CL:0000861!2.36e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000167;5.98e-16;1!CL:0000164;5.98e-16;1!CL:0000502;5.98e-16;1!CL:0000172;5.98e-16;1!CL:0002553;5.98e-16;1!CL:0000173;5.98e-16;1!CL:1000415;1.73e-08;2!CL:0000082;2.51e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,5.56e-16,1;CL:0000164,5.56e-16,1;CL:0000502,5.56e-16,1;CL:0000172,5.56e-16,1;CL:0000173,5.56e-16,1;CL:0002351,5.56e-16,1;CL:0002553,6.44e-16,1;CL:1000415,1.73e-08,2;CL:0000082,2.54e-07,19;CL:0000066,8.33e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002351;5.98e-16;1!UBERON:0001041;6.96e-08;30 | |||
|ontology_enrichment_disease=DOID:0050687!8.68e-10!143;DOID:305!2.25e-09!106;DOID:162!2.82e-08!235;DOID:14566!6.60e-08!239 | |ontology_enrichment_disease=DOID:0050687!8.68e-10!143;DOID:305!2.25e-09!106;DOID:162!2.82e-08!235;DOID:14566!6.60e-08!239 | ||
|ontology_enrichment_disease_v019=DOID:4430;5.98e-16;1!DOID:0050619;2.21e-15;1!DOID:3111;2.21e-15;1!DOID:1357;2.21e-15;1!DOID:3603;2.21e-15;1!DOID:0050615;1.80e-14;16!DOID:1324;3.85e-09;15!DOID:1325;5.59e-09;7!DOID:3904;5.59e-09;7!DOID:3910;2.40e-08;2!DOID:3493;2.40e-08;2!DOID:305;2.54e-07;106!DOID:3905;3.55e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,5.56e-16,1;DOID:3111,1.54e-15,1;DOID:3603,1.54e-15,1;DOID:0050619,2.75e-15,1;DOID:1357,2.75e-15,1;DOID:0050615,1.94e-14,16;DOID:305,2.20e-12,106;DOID:0050687,6.65e-11,143;DOID:1324,3.90e-09,15;DOID:1325,5.59e-09,7;DOID:3904,5.59e-09,7;DOID:3493,2.87e-08,2;DOID:3910,3.08e-08,2;DOID:162,2.15e-07,235;DOID:14566,3.28e-07,239;DOID:3905,3.55e-07,9 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;2.21e-15;1!UBERON:0001825;2.21e-15;1!UBERON:0002294;3.73e-09;7!UBERON:0001173;3.73e-09;7!UBERON:0004903;2.40e-08;2!UBERON:0002173;2.40e-08;2!UBERON:0002186;2.40e-08;2!UBERON:0004802;2.51e-07;19!UBERON:0000115;2.51e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,2.75e-15,1;UBERON:0001825,2.75e-15,1;UBERON:0004903,3.08e-08,2;UBERON:0002173,3.08e-08,2;UBERON:0002186,3.08e-08,2;UBERON:0004802,2.54e-07,19;UBERON:0000115,2.54e-07,19;UBERON:0002294,2.60e-07,9;UBERON:0001173,2.60e-07,9;UBERON:0004912,2.60e-07,9 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0.764637207142375,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,5.05279459102193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0.102268682502155,0,0,0,3.40140231883657,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,1.01701460117107,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0.664653872707185,0,0,0,0,0,0.173559738335131,0,0,0,0,0.774050650312681,1.31560770755134,0.574808199372465,0,0,0,0,0,0,2.15106521008283,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,1.25643277000187,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,1.90180911022764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,6.40456598628376,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0.9555033757741,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21917924982269,0,0,0,0,0,0,0,1.92008339466232,0,0,0,0,5.64380755633827,0.245148321753905,6.83461986594715,0,0,0,0.169927114687817,0.0939839179798536,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.606229585745915,0.803892390468535,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr20:401500..401515,+ | |short_description=p@chr20:401500..401515,+ | ||
}} | }} |
Latest revision as of 14:04, 28 July 2015
Short description: | p@chr20:401500..401515, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:401500..401515, + |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 5.56e-16 | 1 |
enteroendocrine cell | 5.56e-16 | 1 |
type D enteroendocrine cell | 5.56e-16 | 1 |
somatostatin secreting cell | 5.56e-16 | 1 |
pancreatic D cell | 5.56e-16 | 1 |
progenitor cell of endocrine pancreas | 5.56e-16 | 1 |
lung fibroblast | 6.44e-16 | 1 |
epithelial cell of gall bladder | 1.73e-08 | 2 |
epithelial cell of lung | 2.54e-07 | 19 |
epithelial cell | 8.33e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 2.75e-15 | 1 |
paranasal sinus | 2.75e-15 | 1 |
bronchoalveolar duct junction | 3.08e-08 | 2 |
alveolar duct | 3.08e-08 | 2 |
bronchiole | 3.08e-08 | 2 |
respiratory tract epithelium | 2.54e-07 | 19 |
lung epithelium | 2.54e-07 | 19 |
biliary system | 2.60e-07 | 9 |
biliary tree | 2.60e-07 | 9 |
biliary bud | 2.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 5.56e-16 | 1 |
cystadenocarcinoma | 1.54e-15 | 1 |
mucinous cystadenocarcinoma | 1.54e-15 | 1 |
paranasal sinus cancer | 2.75e-15 | 1 |
maxillary sinus cancer | 2.75e-15 | 1 |
respiratory system cancer | 1.94e-14 | 16 |
carcinoma | 2.20e-12 | 106 |
cell type cancer | 6.65e-11 | 143 |
lung cancer | 3.90e-09 | 15 |
bronchus cancer | 5.59e-09 | 7 |
bronchogenic carcinoma | 5.59e-09 | 7 |
signet ring cell adenocarcinoma | 2.87e-08 | 2 |
lung adenocarcinoma | 3.08e-08 | 2 |
cancer | 2.15e-07 | 235 |
disease of cellular proliferation | 3.28e-07 | 239 |
lung carcinoma | 3.55e-07 | 9 |