FFCP PHASE1:Hg19::chr6:160114635..160114647,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-275bp_to_ENST00000538183_5end | |association_with_transcript=-275bp_to_ENST00000538183_5end | ||
|cluster_id=chr6:160114635..160114647,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_29_at_SOD2_5end | |description=CAGE_peak_29_at_SOD2_5end | ||
|id=chr6:160114635..160114647,- | |id=chr6:160114635..160114647,- | ||
|ontology_enrichment_celltype=CL:0002057!4.09e-27!42;CL:0000860!2.79e-25!45;CL:0000766!9.39e-18!76;CL:0002194!5.19e-16!63;CL:0000576!5.19e-16!63;CL:0000040!5.19e-16!63;CL:0000559!5.19e-16!63;CL:0002009!4.64e-15!65;CL:0000839!1.09e-13!70;CL:0000557!2.74e-13!71;CL:0000763!8.30e-08!112;CL:0000049!8.30e-08!112 | |ontology_enrichment_celltype=CL:0002057!4.09e-27!42;CL:0000860!2.79e-25!45;CL:0000766!9.39e-18!76;CL:0002194!5.19e-16!63;CL:0000576!5.19e-16!63;CL:0000040!5.19e-16!63;CL:0000559!5.19e-16!63;CL:0002009!4.64e-15!65;CL:0000839!1.09e-13!70;CL:0000557!2.74e-13!71;CL:0000763!8.30e-08!112;CL:0000049!8.30e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.07e-57;33!CL:0002057;8.07e-57;33!CL:0000473;1.49e-39;39!CL:0000234;1.49e-39;39!CL:0000576;2.27e-28;48!CL:0000766;1.94e-19;69!CL:0000775;6.36e-12;3!CL:0000094;6.45e-12;8!CL:0000763;3.97e-11;100!CL:0000771;4.29e-09;2!CL:0000081;1.47e-08;11!CL:0002087;2.35e-08;104!CL:0002561;9.72e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.23e-57,42;CL:0002057,2.23e-57,42;CL:0000473,2.63e-49,48;CL:0000234,2.63e-49,48;CL:0000766,2.84e-44,72;CL:0002194,5.15e-38,59;CL:0000576,5.15e-38,59;CL:0000040,5.15e-38,59;CL:0000559,5.15e-38,59;CL:0002009,1.47e-36,61;CL:0000839,2.67e-33,66;CL:0000557,1.05e-32,67;CL:0000763,6.38e-27,108;CL:0000049,6.38e-27,108;CL:0000738,9.30e-20,136;CL:0002087,2.69e-16,115;CL:0002032,1.78e-15,161;CL:0000837,1.78e-15,161;CL:0002031,2.41e-15,120;CL:0000037,1.65e-14,168;CL:0000988,2.23e-13,177;CL:0000775,4.76e-12,3;CL:0000094,5.41e-12,8;CL:0000771,4.31e-09,2;CL:0000081,1.30e-08,11;CL:0002561,1.01e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;2.44e-42;42!CL:0000049;8.88e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!6.76e-12!115;UBERON:0002371!1.23e-11!80;UBERON:0001474!4.30e-11!86;UBERON:0004765!5.89e-11!101;UBERON:0001434!5.89e-11!101;UBERON:0002390!6.54e-11!102;UBERON:0003061!6.54e-11!102;UBERON:0002193!1.21e-10!112;UBERON:0002204!1.62e-10!167;UBERON:0007023!2.57e-10!115;UBERON:0000467!2.32e-08!625;UBERON:0000480!2.91e-08!626;UBERON:0000468!2.78e-07!659;UBERON:0000926!3.58e-07!448;UBERON:0004120!3.58e-07!448;UBERON:0006603!3.58e-07!448;UBERON:0000923!4.07e-07!604;UBERON:0005291!4.07e-07!604;UBERON:0006598!4.07e-07!604;UBERON:0002532!4.07e-07!604;UBERON:0002050!5.01e-07!605;UBERON:0005423!5.01e-07!605;UBERON:0000922!5.82e-07!612;UBERON:0000062!6.64e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0005933;9.72e-08;2!UBERON:0005942;9.72e-08;2!UBERON:0005932;9.72e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.68e-28,76;UBERON:0002405,1.45e-27,93;UBERON:0002193,2.63e-26,108;UBERON:0001474,1.61e-25,82;UBERON:0002390,8.30e-24,98;UBERON:0003061,8.30e-24,98;UBERON:0001434,3.01e-23,100;UBERON:0004765,1.16e-22,90;UBERON:0002204,2.44e-14,167;UBERON:0003081,2.86e-12,203;UBERON:0000926,2.94e-08,315;UBERON:0004120,2.94e-08,315;UBERON:0006603,2.94e-08,315;UBERON:0005933,1.01e-07,2;UBERON:0005942,1.01e-07,2;UBERON:0005932,1.01e-07,2 | |||
|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0.331397375727916,0,0,1.46062018077475,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,1.10799081706375,1.80490002723128,0.434021741431704,0,0,0.257575567634187,1.01778767145695,0,0.242584061187816,2.78914844286822,2.87817521615278,3.09706370895104,3.45230870786581,2.30544635876191,1.6553756092201,4.13694816883942,3.22742341791913,8.12558919566051,1.88242339542605,0.545812300115692,2.02251136000576,4.89734227793444,3.20929027076094,3.19668562899521,2.30895910130701,1.19678194572979,0.852449501065388,8.41606792022894,7.37600792098482,5.60540024096017,3.01498398308092,2.60741459210101,0.65156653411535,6.05399502633369,5.89244217580104,3.79754864929061,0,0.212604299965044,0,0,0.150176892841506,0,0.570025487482497,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,0,0.869079113764942,0,1.45990461090791,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,9.22462922052443,11.6334079244498,0,0,0.25326102332916,0,0,0,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0.901428353439581,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,0,0,0,1.29929802984966,1.38895653772983,3.23432058798817,0,0,0,0.234004265139238,0.594524649154913,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0.904318131178758,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0.895304816199478,0,0,0.215627574859517,0,0,0,0,0,0.637938751653163,6.74106321552464,2.99161459204025,2.90090859405225,0.49076596687656,0.500170521059677,0,0,0,0,0,1.50473049863859,0,0,0,0,0.0868836144680828,0,0,0,0.647142602455851,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0.262248829918848,0.451199612907412,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,1.6068392984416,0.96670718292122,0,0,0,0.214840489736547,0.435050081742686,0.170453254832202,0.0890320356467374,0,0.192190067365106,0,0,0,0,0.6970372701606,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0.42793898803392,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0,0,0,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,1.68886108238131,1.64647446479951,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,1.29694662238543,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0.333926115068718,0,0,0.19924798825107,0,0,0.306806047506464,0.123084805461069,0,0,0,0,0.295930216910801,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0.384751292518985,0.341826167541004,0,0,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0.30607276163049,1.45329133145522,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0.0870592065804026,0,0,0,0.0730893170861856,0,0.290967049465258,0,0.225980740780532,0,0,0,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0.429765441419957,0,0.279282401272254,0.229160424011684,2.87149209830726,1.19807400299395,0.429226048136571,0.89268582976749,0.403100834920358,0,0,0.157566364614447,0.412079291905832,0.404421263125109,0.196854963029498,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0.242998226632099,0,1.02447419488958,0.262272940674991,0.105600336519406,0,0.191915197319445,0,2.64836788146173,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.58620893471233,0,0.258565912723101,0.79339561045614,0,0,0.106787412567695,0.471612915298998,1.24271716604159,0,0,0,0,0.544017803369474,0,0.919036730290385,0.655745261419609,0,0,0.366078794705889,0.3755727921195,0,0.443716206147409,0.434674820589684,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0.189403005275089,0,0.889811221596536,0.228840068396924,0,0,0.591420599958536,0.159296767163702,0.899606224327209,0,0,0,0.521745061811734,0,0,0.406870733204662,0.363697318405119,0.214821114084977,0.464033759878494,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0.657852148736121,0,0,0.337884881306145,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0.128458450192919,0,0.319267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| ||
|short_description=p29@SOD2 | |short_description=p29@SOD2 | ||
}} | }} |
Latest revision as of 14:51, 16 September 2015
Short description: | p29@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_SOD2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -275bp_to_ENST00000538183_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.23e-57 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.23e-57 | 42 |
defensive cell | 2.63e-49 | 48 |
phagocyte | 2.63e-49 | 48 |
myeloid leukocyte | 2.84e-44 | 72 |
monopoietic cell | 5.15e-38 | 59 |
monocyte | 5.15e-38 | 59 |
monoblast | 5.15e-38 | 59 |
promonocyte | 5.15e-38 | 59 |
macrophage dendritic cell progenitor | 1.47e-36 | 61 |
myeloid lineage restricted progenitor cell | 2.67e-33 | 66 |
granulocyte monocyte progenitor cell | 1.05e-32 | 67 |
myeloid cell | 6.38e-27 | 108 |
common myeloid progenitor | 6.38e-27 | 108 |
leukocyte | 9.30e-20 | 136 |
nongranular leukocyte | 2.69e-16 | 115 |
hematopoietic oligopotent progenitor cell | 1.78e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 2.41e-15 | 120 |
hematopoietic stem cell | 1.65e-14 | 168 |
hematopoietic cell | 2.23e-13 | 177 |
neutrophil | 4.76e-12 | 3 |
granulocyte | 5.41e-12 | 8 |
eosinophil | 4.31e-09 | 2 |
blood cell | 1.30e-08 | 11 |
outer root sheath cell | 1.01e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.68e-28 | 76 |
immune system | 1.45e-27 | 93 |
hemolymphoid system | 2.63e-26 | 108 |
bone element | 1.61e-25 | 82 |
hematopoietic system | 8.30e-24 | 98 |
blood island | 8.30e-24 | 98 |
skeletal system | 3.01e-23 | 100 |
skeletal element | 1.16e-22 | 90 |
musculoskeletal system | 2.44e-14 | 167 |
lateral plate mesoderm | 2.86e-12 | 203 |
mesoderm | 2.94e-08 | 315 |
mesoderm-derived structure | 2.94e-08 | 315 |
presumptive mesoderm | 2.94e-08 | 315 |
hair root sheath | 1.01e-07 | 2 |
hair outer root sheath | 1.01e-07 | 2 |
bulb of hair follicle | 1.01e-07 | 2 |