FFCP PHASE1:Hg19::chr1:62902035..62902075,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7398 | |EntrezGene=7398 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12607 | |HGNC=12607 | ||
|TSSclassifier=strong | |||
|UniProt=O94782 | |UniProt=O94782 | ||
|association_with_transcript=60bp_to_ENST00000371146,NM_001017415,NM_001017416,uc001daj.1,uc001dak.1_5end | |association_with_transcript=60bp_to_ENST00000371146,NM_001017415,NM_001017416,uc001daj.1,uc001dak.1_5end | ||
|cluster_id=chr1:62902035..62902075,+ | |||
|description=CAGE_peak_4_at_USP1_5end | |description=CAGE_peak_4_at_USP1_5end | ||
|id=chr1:62902035..62902075,+ | |id=chr1:62902035..62902075,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.58e-27!172;CL:0000566!1.58e-27!172;CL:0002032!2.70e-27!165;CL:0000837!2.70e-27!165;CL:0000738!2.14e-26!140;CL:0000988!3.06e-24!182;CL:0002031!1.26e-23!124;CL:0000763!2.98e-22!112;CL:0000049!2.98e-22!112;CL:0000860!8.64e-22!45;CL:0000766!3.51e-21!76;CL:0002087!4.73e-21!119;CL:0002057!1.62e-20!42;CL:0000839!1.13e-19!70;CL:0000557!3.09e-18!71;CL:0002009!1.15e-17!65;CL:0002194!4.27e-17!63;CL:0000576!4.27e-17!63;CL:0000040!4.27e-17!63;CL:0000559!4.27e-17!63 | |ontology_enrichment_celltype=CL:0000037!1.58e-27!172;CL:0000566!1.58e-27!172;CL:0002032!2.70e-27!165;CL:0000837!2.70e-27!165;CL:0000738!2.14e-26!140;CL:0000988!3.06e-24!182;CL:0002031!1.26e-23!124;CL:0000763!2.98e-22!112;CL:0000049!2.98e-22!112;CL:0000860!8.64e-22!45;CL:0000766!3.51e-21!76;CL:0002087!4.73e-21!119;CL:0002057!1.62e-20!42;CL:0000839!1.13e-19!70;CL:0000557!3.09e-18!71;CL:0002009!1.15e-17!65;CL:0002194!4.27e-17!63;CL:0000576!4.27e-17!63;CL:0000040!4.27e-17!63;CL:0000559!4.27e-17!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.11e-24;33!CL:0002057;4.11e-24;33!CL:0000576;9.33e-19;48!CL:0000473;1.04e-17;39!CL:0000234;1.04e-17;39!CL:0000766;5.74e-14;69!CL:0000763;9.37e-09;100!CL:0002087;2.63e-08;104!CL:0000738;6.86e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,4.26e-29,161;CL:0000837,4.26e-29,161;CL:0000738,1.67e-28,136;CL:0000037,3.48e-28,168;CL:0000860,1.23e-27,42;CL:0002057,1.23e-27,42;CL:0000766,4.99e-27,72;CL:0000763,1.04e-25,108;CL:0000049,1.04e-25,108;CL:0000988,1.33e-25,177;CL:0002031,2.27e-25,120;CL:0000473,4.06e-25,48;CL:0000234,4.06e-25,48;CL:0000839,3.14e-24,66;CL:0002087,2.92e-22,115;CL:0000557,4.14e-22,67;CL:0002009,2.27e-21,61;CL:0002194,3.41e-21,59;CL:0000576,3.41e-21,59;CL:0000040,3.41e-21,59;CL:0000559,3.41e-21,59 | |||
|ontology_enrichment_development_v019=CL:0002057;5.84e-21;42!CL:0000049;3.52e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.20e-19!102;UBERON:0003061!6.20e-19!102;UBERON:0002371!4.74e-16!80;UBERON:0002193!8.62e-16!112;UBERON:0001474!1.87e-15!86;UBERON:0004765!9.42e-12!101;UBERON:0001434!9.42e-12!101;UBERON:0007023!7.65e-10!115;UBERON:0002405!3.38e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.73e-21,98;UBERON:0003061,2.73e-21,98;UBERON:0002371,1.65e-19,76;UBERON:0001474,5.68e-19,82;UBERON:0002193,6.04e-18,108;UBERON:0004765,1.36e-15,90;UBERON:0002405,8.11e-15,93;UBERON:0001434,7.01e-13,100;UBERON:0007023,3.26e-09,114 | |||
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| ||
|short_description=p4@USP1 | |short_description=p4@USP1 | ||
}} | }} |
Latest revision as of 19:58, 18 September 2015
Short description: | p4@USP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_USP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 60bp_to_ENST00000371146, NM_001017415, NM_001017416, uc001daj.1, uc001dak.1_5end |
EntrezGene: | USP1 |
HGNC: | 12607 |
UniProt: | O94782 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 4.26e-29 | 161 |
hematopoietic multipotent progenitor cell | 4.26e-29 | 161 |
leukocyte | 1.67e-28 | 136 |
hematopoietic stem cell | 3.48e-28 | 168 |
classical monocyte | 1.23e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.23e-27 | 42 |
myeloid leukocyte | 4.99e-27 | 72 |
myeloid cell | 1.04e-25 | 108 |
common myeloid progenitor | 1.04e-25 | 108 |
hematopoietic cell | 1.33e-25 | 177 |
hematopoietic lineage restricted progenitor cell | 2.27e-25 | 120 |
defensive cell | 4.06e-25 | 48 |
phagocyte | 4.06e-25 | 48 |
myeloid lineage restricted progenitor cell | 3.14e-24 | 66 |
nongranular leukocyte | 2.92e-22 | 115 |
granulocyte monocyte progenitor cell | 4.14e-22 | 67 |
macrophage dendritic cell progenitor | 2.27e-21 | 61 |
monopoietic cell | 3.41e-21 | 59 |
monocyte | 3.41e-21 | 59 |
monoblast | 3.41e-21 | 59 |
promonocyte | 3.41e-21 | 59 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.73e-21 | 98 |
blood island | 2.73e-21 | 98 |
bone marrow | 1.65e-19 | 76 |
bone element | 5.68e-19 | 82 |
hemolymphoid system | 6.04e-18 | 108 |
skeletal element | 1.36e-15 | 90 |
immune system | 8.11e-15 | 93 |
skeletal system | 7.01e-13 | 100 |
adult organism | 3.26e-09 | 114 |