FFCP PHASE1:Hg19::chr5:89825328..89825422,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=116068 | |EntrezGene=116068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26969 | |HGNC=26969 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z3D4,G5E9N8,A8K613 | |UniProt=Q7Z3D4,G5E9N8,A8K613 | ||
|association_with_transcript=0bp_to_ENST00000315948,ENST00000453259,ENST00000500869,ENST00000509384,ENST00000554351,NM_198273,uc003kjr.2,uc003kjs.1,uc010jaz.1_5end | |association_with_transcript=0bp_to_ENST00000315948,ENST00000453259,ENST00000500869,ENST00000509384,ENST00000554351,NM_198273,uc003kjr.2,uc003kjs.1,uc010jaz.1_5end | ||
|cluster_id=chr5:89825328..89825422,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_LYSMD3_5end | |description=CAGE_peak_1_at_LYSMD3_5end | ||
|id=chr5:89825328..89825422,- | |id=chr5:89825328..89825422,- | ||
|ontology_enrichment_celltype=CL:0000738!6.03e-18!140;CL:0002031!3.37e-15!124;CL:0000037!6.11e-13!172;CL:0000566!6.11e-13!172;CL:0000766!7.22e-13!76;CL:0002057!7.52e-13!42;CL:0002087!1.58e-12!119;CL:0002032!2.08e-12!165;CL:0000837!2.08e-12!165;CL:0000860!1.96e-11!45;CL:0000988!6.14e-11!182;CL:0000839!8.90e-11!70;CL:0000134!2.29e-10!358;CL:0000557!2.84e-10!71;CL:0002320!8.90e-10!365;CL:0002009!1.19e-08!65;CL:0000763!3.34e-08!112;CL:0000049!3.34e-08!112;CL:0002194!4.45e-08!63;CL:0000576!4.45e-08!63;CL:0000040!4.45e-08!63;CL:0000559!4.45e-08!63 | |ontology_enrichment_celltype=CL:0000738!6.03e-18!140;CL:0002031!3.37e-15!124;CL:0000037!6.11e-13!172;CL:0000566!6.11e-13!172;CL:0000766!7.22e-13!76;CL:0002057!7.52e-13!42;CL:0002087!1.58e-12!119;CL:0002032!2.08e-12!165;CL:0000837!2.08e-12!165;CL:0000860!1.96e-11!45;CL:0000988!6.14e-11!182;CL:0000839!8.90e-11!70;CL:0000134!2.29e-10!358;CL:0000557!2.84e-10!71;CL:0002320!8.90e-10!365;CL:0002009!1.19e-08!65;CL:0000763!3.34e-08!112;CL:0000049!3.34e-08!112;CL:0002194!4.45e-08!63;CL:0000576!4.45e-08!63;CL:0000040!4.45e-08!63;CL:0000559!4.45e-08!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.06e-15;33!CL:0002057;7.06e-15;33!CL:0000576;1.89e-09;48!CL:0000473;2.94e-09;39!CL:0000234;2.94e-09;39!CL:0000766;2.22e-07;69!CL:0002087;8.53e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.33e-18,136;CL:0002031,7.79e-16,120;CL:0000766,1.01e-13,72;CL:0000037,2.37e-13,168;CL:0002087,4.40e-13,115;CL:0000860,7.52e-13,42;CL:0002057,7.52e-13,42;CL:0002032,8.03e-13,161;CL:0000837,8.03e-13,161;CL:0000988,1.12e-11,177;CL:0000839,1.47e-11,66;CL:0000557,5.19e-11,67;CL:0000134,5.58e-11,354;CL:0002320,2.30e-10,361;CL:0000473,9.10e-10,48;CL:0000234,9.10e-10,48;CL:0002009,2.50e-09,61;CL:0002194,9.92e-09,59;CL:0000576,9.92e-09,59;CL:0000040,9.92e-09,59;CL:0000559,9.92e-09,59;CL:0000763,1.33e-08,108;CL:0000049,1.33e-08,108;CL:0000219,8.08e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;4.23e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.73e-14!102;UBERON:0003061!2.73e-14!102;UBERON:0002193!6.99e-13!112;UBERON:0002384!1.75e-10!375;UBERON:0004765!4.58e-10!101;UBERON:0001434!4.58e-10!101;UBERON:0001474!4.98e-10!86;UBERON:0002371!7.59e-10!80;UBERON:0002405!7.67e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.20e-15,98;UBERON:0003061,5.20e-15,98;UBERON:0002193,1.75e-13,108;UBERON:0004765,2.99e-11,90;UBERON:0002384,4.32e-11,371;UBERON:0001474,1.23e-10,82;UBERON:0002371,1.75e-10,76;UBERON:0001434,2.37e-10,100;UBERON:0002405,2.98e-09,93 | |||
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| ||
|short_description=p1@LYSMD3 | |short_description=p1@LYSMD3 | ||
}} | }} |
Latest revision as of 04:37, 19 September 2015
Short description: | p1@LYSMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LYSMD3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000315948, ENST00000453259, ENST00000500869, ENST00000509384, ENST00000554351, NM_198273, uc003kjr.2, uc003kjs.1, uc010jaz.1_5end |
EntrezGene: | LYSMD3 |
HGNC: | 26969 |
UniProt: | Q7Z3D4G5E9N8A8K613 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.33e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 7.79e-16 | 120 |
myeloid leukocyte | 1.01e-13 | 72 |
hematopoietic stem cell | 2.37e-13 | 168 |
nongranular leukocyte | 4.40e-13 | 115 |
classical monocyte | 7.52e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.52e-13 | 42 |
hematopoietic oligopotent progenitor cell | 8.03e-13 | 161 |
hematopoietic multipotent progenitor cell | 8.03e-13 | 161 |
hematopoietic cell | 1.12e-11 | 177 |
myeloid lineage restricted progenitor cell | 1.47e-11 | 66 |
granulocyte monocyte progenitor cell | 5.19e-11 | 67 |
mesenchymal cell | 5.58e-11 | 354 |
connective tissue cell | 2.30e-10 | 361 |
defensive cell | 9.10e-10 | 48 |
phagocyte | 9.10e-10 | 48 |
macrophage dendritic cell progenitor | 2.50e-09 | 61 |
monopoietic cell | 9.92e-09 | 59 |
monocyte | 9.92e-09 | 59 |
monoblast | 9.92e-09 | 59 |
promonocyte | 9.92e-09 | 59 |
myeloid cell | 1.33e-08 | 108 |
common myeloid progenitor | 1.33e-08 | 108 |
motile cell | 8.08e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.20e-15 | 98 |
blood island | 5.20e-15 | 98 |
hemolymphoid system | 1.75e-13 | 108 |
skeletal element | 2.99e-11 | 90 |
connective tissue | 4.32e-11 | 371 |
bone element | 1.23e-10 | 82 |
bone marrow | 1.75e-10 | 76 |
skeletal system | 2.37e-10 | 100 |
immune system | 2.98e-09 | 93 |