FFCP PHASE1:Hg19::chr5:82767487..82767510,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=P13611,Q86W61,Q6MZK8,Q59FG9 | |UniProt=P13611,Q86W61,Q6MZK8,Q59FG9 | ||
|association_with_transcript=0bp_to_ENST00000342785,ENST00000343200,NM_001126336,NM_001164097,NM_001164098,NM_004385,uc003kih.3,uc003kii.3,uc003kij.3,uc003kik.3,uc010jau.2_5end | |association_with_transcript=0bp_to_ENST00000342785,ENST00000343200,NM_001126336,NM_001164097,NM_001164098,NM_004385,uc003kih.3,uc003kii.3,uc003kij.3,uc003kik.3,uc010jau.2_5end | ||
|cluster_id=chr5:82767487..82767510,+ | |||
|coexpression_cluster_id=C4524 | |||
|description=CAGE_peak_5_at_VCAN_5end | |description=CAGE_peak_5_at_VCAN_5end | ||
|id=chr5:82767487..82767510,+ | |id=chr5:82767487..82767510,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.56e-22!180;CL:0002057!1.98e-15!42;CL:0000393!2.64e-13!60;CL:0000211!2.64e-13!60;CL:0000860!7.91e-13!45;CL:0000680!1.45e-11!57;CL:0000056!1.45e-11!57;CL:0000355!1.45e-11!57;CL:0000187!2.42e-11!54;CL:0000057!1.24e-10!75;CL:0000183!1.85e-10!59;CL:0000034!1.75e-09!444;CL:0000048!2.08e-09!430;CL:0000723!9.66e-09!436;CL:0000192!5.32e-08!42;CL:0000514!5.32e-08!42;CL:0000359!2.89e-07!32 | |ontology_enrichment_celltype=CL:0000055!4.56e-22!180;CL:0002057!1.98e-15!42;CL:0000393!2.64e-13!60;CL:0000211!2.64e-13!60;CL:0000860!7.91e-13!45;CL:0000680!1.45e-11!57;CL:0000056!1.45e-11!57;CL:0000355!1.45e-11!57;CL:0000187!2.42e-11!54;CL:0000057!1.24e-10!75;CL:0000183!1.85e-10!59;CL:0000034!1.75e-09!444;CL:0000048!2.08e-09!430;CL:0000723!9.66e-09!436;CL:0000192!5.32e-08!42;CL:0000514!5.32e-08!42;CL:0000359!2.89e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.37e-15;33!CL:0002057;1.37e-15;33!CL:0000473;2.34e-09;39!CL:0000234;2.34e-09;39!CL:0000576;6.41e-08;48!CL:0000393;7.72e-08;61!CL:0000211;7.72e-08;61!CL:0000359;1.45e-07;32!CL:0000187;2.50e-07;55!CL:0000192;7.30e-07;43!CL:0002334;8.57e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.96e-15,42;CL:0002057,1.96e-15,42;CL:0000393,2.52e-14,61;CL:0000211,2.52e-14,61;CL:0000680,1.89e-12,58;CL:0000056,1.89e-12,58;CL:0000355,1.89e-12,58;CL:0000187,3.31e-12,55;CL:0000048,1.31e-11,427;CL:0000034,1.59e-11,441;CL:0000473,3.30e-11,48;CL:0000234,3.30e-11,48;CL:0000057,3.39e-11,76;CL:0000723,1.08e-10,433;CL:0000192,1.34e-08,43;CL:0000514,1.34e-08,43;CL:0000359,9.90e-08,32 | |||
|ontology_enrichment_development_v019=CL:0002057;1.66e-11;42!CL:0000355;5.89e-07;58!CL:0000514;7.30e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!3.33e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.12e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.57e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!1.25e-17!659;UBERON:0000467!1.14e-13!625;UBERON:0000480!1.41e-13!626;UBERON:0000922!3.28e-13!612;UBERON:0002204!5.11e-13!167;UBERON:0000914!1.52e-12!83;UBERON:0002329!1.52e-12!83;UBERON:0003077!1.52e-12!83;UBERON:0003059!1.52e-12!83;UBERON:0007282!1.52e-12!83;UBERON:0009618!1.52e-12!83;UBERON:0007285!1.52e-12!83;UBERON:0004290!3.90e-12!70;UBERON:0001134!7.25e-12!61;UBERON:0002036!7.25e-12!61;UBERON:0003082!7.25e-12!61;UBERON:0002385!2.26e-11!63;UBERON:0001015!2.26e-11!63;UBERON:0000383!2.26e-11!63;UBERON:0002050!2.78e-11!605;UBERON:0005423!2.78e-11!605;UBERON:0000923!6.25e-11!604;UBERON:0005291!6.25e-11!604;UBERON:0006598!6.25e-11!604;UBERON:0002532!6.25e-11!604;UBERON:0000486!1.44e-08!82;UBERON:0000479!4.49e-08!787;UBERON:0000062!4.98e-08!511;UBERON:0005256!1.06e-07!143;UBERON:0000475!1.11e-07!365;UBERON:0000948!1.70e-07!24;UBERON:0005498!1.70e-07!24;UBERON:0004140!1.70e-07!24;UBERON:0009881!1.70e-07!24;UBERON:0004141!1.70e-07!24;UBERON:0003084!1.70e-07!24;UBERON:0007005!1.70e-07!24;UBERON:0004139!1.70e-07!24;UBERON:0004291!1.70e-07!24;UBERON:0001017!2.52e-07!82;UBERON:0007100!4.81e-07!27;UBERON:0005743!7.26e-07!86;UBERON:0000926!8.70e-07!448;UBERON:0004120!8.70e-07!448;UBERON:0006603!8.70e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;2.70e-07;22!UBERON:0002385;5.22e-07;31!UBERON:0001015;5.22e-07;31!UBERON:0000383;5.22e-07;31 | |||
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|phase1_expression=9.26559734279839,2.78330681058278,10.007762690814,2.00146596706261,4.02264984984559,13.9574163856059,2.53299878168311,0.631719873426831,1.56711376919903,1.47440361900905,0.697801167972428,0,0.791300934685361,1.73272894144065,3.97676850873499,8.0679017574213,10.2458069764076,8.03341099426111,4.39139518911456,5.41732655537867,4.48801520737357,8.46327747990837,9.73202356245593,9.58120975510189,10.6711243655582,0,0,0,5.11373559903575,9.59573495243032,6.34746105595912,0,0.30120591877825,0,0,0,0.293600439334847,7.75593571944628,15.8430113501412,8.89744569934992,0,0,0,14.8306203555156,4.91238726795452,7.5201058968223,21.383471395323,7.40102198439286,7.43295290148249,14.9600044007518,9.47794614157672,6.85798466676897,24.1321976515633,7.74581620300591,5.41705946377367,16.9418105588344,6.5497476013883,6.96642801779762,18.3650335422542,9.30694178520671,6.39337125799041,21.1104832119498,8.17800996248691,8.52449501065388,16.2517173632007,4.53908179752912,6.85104473895132,18.8436498942557,7.82224377630302,10.4250645458456,17.5565855763677,6.99727508376373,7.91155968602211,1.69004229049553,1.70083439972035,3.35453832813401,19.2081959260507,24.1784797474825,21.3765030307117,0.855038231223746,0.39783335439818,0.365328307529268,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,1.76171156811282,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.752875595388864,0.383959833463255,0,0.710331756132051,0,0,0,0,4.87613732627923,5.36560687762909,3.83587685530591,4.3372698286148,2.50668955317945,1.01392563272577,3.9764297352555,3.89307896242109,9.35894689924272,13.747222642679,15.0197483535246,1.17881167947941,0,0,0,0,0,0.715471872916026,0.571994910780128,0,0,0,0,0,0,0,0.417989933073621,1.29208379584664,2.13459757612026,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,17.8909902610315,15.069030888085,27.9383371515892,94.6560848471085,10.2853830837524,5.04609840128076,6.4049397437823,7.4000264525148,21.4735614425839,8.08264032418128,7.68270944633256,4.69208025699287,6.33793516927999,0.234321431833797,1.24864030732128,0.570471821544449,0.597794722207204,3.28816596202542,2.75184005425824,3.65172097425846,2.04154171254893,3.0708579327942,3.40975077880026,10.6920257155385,5.19260551484969,0.910161361938026,0,4.04006673489759,4.12891115577482,1.93944880838928,2.63386572528503,4.90380473278431,6.91095070970345,4.8775838758809,27.267224624707,5.12537733164562,2.11931901159562,14.1042815159669,4.32820622801443,9.53269998168828,3.53622027030021,25.991555165155,8.86676746966907,13.126556260694,2.57739716198438,1.77810662500693,21.3005755509969,5.84362169720314,1.18692414617341,0,0,0.286804595389004,8.41618572294208,10.8674410023618,8.48215782947484,10.0551223364909,8.32658807889574,4.74470566798579,9.38697193978896,5.14592750554308,2.76269842704961,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,5.60967095213783,0.4115740113314,1.47008711385542,0,0.982827216677626,0,0,0.122988438543114,2.91665277507493,0.878002283269004,0,0,1.38882667737794,0,0,0,1.39116485970092,44.7327125038481,0,0,0,0,0,0.738651018262192,0.234004265139238,0.297262324577456,0,1.6798212819886,0.567100388969546,1.79117045405697,2.3250715081117,1.53353071666084,0,0,0,0.432359860250884,0.6312121671319,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0,1.34557301214433,2.61576041299968,2.12681028880755,12.6686281442622,0,1.690605505112,6.38251479803689,4.16029747645464,0.771622122786426,0,0,1.00084595560703,0,2.46972101034231,3.58309802723109,1.06617584622764,3.16780749173372,1.80863626235752,6.97226766880235,1.89948683245908,0,0,0,2.87549826589899,0,8.5582143024431,2.89562613335158,2.4657158706046,4.65558504423729,0,0.788123040807709,0,0.513372145118994,6.86055485400651,11.712586847186,5.41302168944387,6.8681668787083,5.10351001322531,0,0,0,3.55805325985506,5.00170521059677,2.17012018959788,6.44709670745502,4.81758269752337,2.68094105557689,8.19989904948992,3.61135319673263,4.5481500811197,1.03473071292505,6.64225598535437,1.47495334833363,2.95404289191482,0.391602314925481,1.02943027143257,4.75566460082641,4.52999821719095,2.98837161849644,0,1.66435439510497,0.604780586659361,17.6156543551332,38.8258792418798,10.6650835884568,14.3515847166385,15.3512174720011,13.8334372183502,0,8.01890407773809,10.6537035187876,9.033987161519,18.1739050214267,7.08883308605751,0.241718899183244,3.60911646545913,0.276242966807689,3.55924789310281,2.54927635209404,0.131124414959424,1.80479845162965,3.38867483259425,7.0591479225917,4.38417673959782,10.0274047448232,0,0,4.10240240594065,0,2.16757150035082,5.01689773854853,0.764628819135115,0,4.92524460388792,0,0,0,0.656029291399411,2.92840555197873,0.9273691048295,0.915694648183434,0.990113999047056,1.14853107599234,0,8.03419649220798,9.28038895604371,4.46740989632469,5.98664331431905,4.13509717453592,8.27135885485707,8.55598494093948,6.64767693845587,12.7315810974834,1.81813406897076,0.768760269460425,1.14851441245126,0,1.85938219718914,74.610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| ||
|short_description=p5@VCAN | |short_description=p5@VCAN | ||
}} | }} |
Latest revision as of 00:40, 19 September 2015
Short description: | p5@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VCAN_5end |
Coexpression cluster: | C4524_Fibroblast_Smooth_Preadipocyte_Lens_CD14_mesenchymal_serous |
Association with transcript: | 0bp_to_ENST00000342785, ENST00000343200, NM_001126336, NM_001164097, NM_001164098, NM_004385, uc003kih.3, uc003kii.3, uc003kij.3, uc003kik.3, uc010jau.2_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611Q86W61Q6MZK8Q59FG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.96e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.96e-15 | 42 |
electrically responsive cell | 2.52e-14 | 61 |
electrically active cell | 2.52e-14 | 61 |
muscle precursor cell | 1.89e-12 | 58 |
myoblast | 1.89e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.89e-12 | 58 |
muscle cell | 3.31e-12 | 55 |
multi fate stem cell | 1.31e-11 | 427 |
stem cell | 1.59e-11 | 441 |
defensive cell | 3.30e-11 | 48 |
phagocyte | 3.30e-11 | 48 |
fibroblast | 3.39e-11 | 76 |
somatic stem cell | 1.08e-10 | 433 |
smooth muscle cell | 1.34e-08 | 43 |
smooth muscle myoblast | 1.34e-08 | 43 |
vascular associated smooth muscle cell | 9.90e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.57e-09 | 14 |