FFCP PHASE1:Hg19::chr5:64859094..64859136,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23398 | |EntrezGene=23398 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28954 | |HGNC=28954 | ||
|TSSclassifier=strong | |||
|UniProt=D6RHV0,D6RA12,D6RDA4,D6RB19,F5H7P7,B4DWR9,Q96BP3 | |UniProt=D6RHV0,D6RA12,D6RDA4,D6RB19,F5H7P7,B4DWR9,Q96BP3 | ||
|association_with_transcript=0bp_to_ENST00000503435,ENST00000510930,ENST00000511908,ENST00000515447,ENST00000535264,ENST00000538977,NM_015342,uc003jtv.3,uc011cqv.1,uc011cqw.1_5end | |association_with_transcript=0bp_to_ENST00000503435,ENST00000510930,ENST00000511908,ENST00000515447,ENST00000535264,ENST00000538977,NM_015342,uc003jtv.3,uc011cqv.1,uc011cqw.1_5end | ||
|cluster_id=chr5:64859094..64859136,+ | |||
|coexpression_cluster_id=C2295 | |||
|description=CAGE_peak_1_at_PPWD1_5end | |description=CAGE_peak_1_at_PPWD1_5end | ||
|id=chr5:64859094..64859136,+ | |id=chr5:64859094..64859136,+ | ||
|ontology_enrichment_celltype=CL:0000542!9.58e-16!53;CL:0000051!9.58e-16!53;CL:0000838!1.88e-15!52;CL:0000037!1.28e-13!172;CL:0000566!1.28e-13!172;CL:0002032!1.39e-12!165;CL:0000837!1.39e-12!165;CL:0000988!7.48e-12!182;CL:0000791!1.20e-10!18;CL:0000789!1.20e-10!18;CL:0002420!1.20e-10!18;CL:0002419!1.20e-10!18;CL:0000790!1.20e-10!18;CL:0000084!3.43e-10!25;CL:0000827!3.43e-10!25;CL:0002031!3.50e-10!124;CL:0000738!1.44e-09!140;CL:0002087!1.75e-09!119;CL:0000625!5.99e-08!11 | |ontology_enrichment_celltype=CL:0000542!9.58e-16!53;CL:0000051!9.58e-16!53;CL:0000838!1.88e-15!52;CL:0000037!1.28e-13!172;CL:0000566!1.28e-13!172;CL:0002032!1.39e-12!165;CL:0000837!1.39e-12!165;CL:0000988!7.48e-12!182;CL:0000791!1.20e-10!18;CL:0000789!1.20e-10!18;CL:0002420!1.20e-10!18;CL:0002419!1.20e-10!18;CL:0000790!1.20e-10!18;CL:0000084!3.43e-10!25;CL:0000827!3.43e-10!25;CL:0002031!3.50e-10!124;CL:0000738!1.44e-09!140;CL:0002087!1.75e-09!119;CL:0000625!5.99e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.23e-10;18!CL:0000789;1.23e-10;18!CL:0002419;1.23e-10;18!CL:0000084;3.70e-10;25!CL:0000542;1.85e-09;53!CL:0000625;6.10e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.58e-16,53;CL:0000051,9.58e-16,53;CL:0000838,1.88e-15,52;CL:0000037,1.78e-13,168;CL:0002032,1.92e-12,161;CL:0000837,1.92e-12,161;CL:0000988,3.95e-12,177;CL:0000791,1.20e-10,18;CL:0000789,1.20e-10,18;CL:0002420,1.20e-10,18;CL:0002419,1.20e-10,18;CL:0000790,1.20e-10,18;CL:0000084,3.43e-10,25;CL:0000827,3.43e-10,25;CL:0002031,4.53e-10,120;CL:0000738,1.94e-09,136;CL:0002087,2.26e-09,115;CL:0000625,5.99e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.23e-10;18!CL:0000051;1.85e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.75e-13!115;UBERON:0001049!6.81e-08!57;UBERON:0005068!6.81e-08!57;UBERON:0006241!6.81e-08!57;UBERON:0007135!6.81e-08!57;UBERON:0002780!3.08e-07!41;UBERON:0001890!3.08e-07!41;UBERON:0006240!3.08e-07!41;UBERON:0003080!9.01e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.59e-12,114;UBERON:0001049,2.52e-08,56;UBERON:0005068,2.52e-08,56;UBERON:0006241,2.52e-08,56;UBERON:0007135,2.52e-08,56;UBERON:0000073,1.60e-07,53;UBERON:0002616,1.60e-07,53;UBERON:0002780,3.08e-07,41;UBERON:0001890,3.08e-07,41;UBERON:0003080,3.08e-07,41;UBERON:0006240,3.08e-07,41 | |||
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| ||
|short_description=p1@PPWD1 | |short_description=p1@PPWD1 | ||
}} | }} |
Latest revision as of 10:17, 18 September 2015
Short description: | p1@PPWD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPWD1_5end |
Coexpression cluster: | C2295_CD4_CD8_cerebellum_Small_pituitary_Mast_cord |
Association with transcript: | 0bp_to_ENST00000503435, ENST00000510930, ENST00000511908, ENST00000515447, ENST00000535264, ENST00000538977, NM_015342, uc003jtv.3, uc011cqv.1, uc011cqw.1_5end |
EntrezGene: | PPWD1 |
HGNC: | 28954 |
UniProt: | D6RHV0D6RA12D6RDA4D6RB19F5H7P7B4DWR9Q96BP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.58e-16 | 53 |
common lymphoid progenitor | 9.58e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.88e-15 | 52 |
hematopoietic stem cell | 1.78e-13 | 168 |
hematopoietic oligopotent progenitor cell | 1.92e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.92e-12 | 161 |
hematopoietic cell | 3.95e-12 | 177 |
mature alpha-beta T cell | 1.20e-10 | 18 |
alpha-beta T cell | 1.20e-10 | 18 |
immature T cell | 1.20e-10 | 18 |
mature T cell | 1.20e-10 | 18 |
immature alpha-beta T cell | 1.20e-10 | 18 |
T cell | 3.43e-10 | 25 |
pro-T cell | 3.43e-10 | 25 |
hematopoietic lineage restricted progenitor cell | 4.53e-10 | 120 |
leukocyte | 1.94e-09 | 136 |
nongranular leukocyte | 2.26e-09 | 115 |
CD8-positive, alpha-beta T cell | 5.99e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.59e-12 | 114 |
neural tube | 2.52e-08 | 56 |
neural rod | 2.52e-08 | 56 |
future spinal cord | 2.52e-08 | 56 |
neural keel | 2.52e-08 | 56 |
regional part of nervous system | 1.60e-07 | 53 |
regional part of brain | 1.60e-07 | 53 |
regional part of forebrain | 3.08e-07 | 41 |
forebrain | 3.08e-07 | 41 |
anterior neural tube | 3.08e-07 | 41 |
future forebrain | 3.08e-07 | 41 |