FFCP PHASE1:Hg19::chr12:85304957..85304960,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:85304957..85304960,-
|short_description=p@chr12:85304957..85304960,-
|description=CAGE_peak_at_chr12:85304957..85304960,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:85304957..85304960,- | |||
|description=CAGE_peak_at_chr12:85304957..85304960,- | |||
|id=chr12:85304957..85304960,- | |||
|ontology_enrichment_celltype=CL:0002321!3.55e-08!248;CL:0000220!4.49e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.23e-09;3!CL:0002368;5.93e-08;13!CL:1001319;7.50e-08;1!CL:1000600;7.50e-08;1!CL:0000228;1.79e-07;1!CL:0002372;1.79e-07;1!CL:0002591;1.79e-07;1!CL:0000319;1.79e-07;1!CL:0002202;6.56e-07;9!CL:0002632;6.56e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.46e-09,3;CL:0000069,1.46e-09,3;CL:0000307,1.46e-09,3;CL:0000377,1.46e-09,3;CL:1001319,8.28e-08,1;CL:1000600,8.28e-08,1;CL:0002368,8.58e-08,13;CL:0000228,1.15e-07,1;CL:0002372,1.15e-07,1;CL:0000319,1.91e-07,1;CL:0002591,2.47e-07,1;CL:0002202,8.21e-07,9;CL:0002632,8.21e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;1.23e-09;3 | |||
|ontology_enrichment_disease=DOID:0050687!4.75e-14!143;DOID:14566!7.65e-11!239;DOID:162!5.28e-10!235;DOID:1749!2.89e-09!14;DOID:305!1.57e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.66e-16;14!DOID:1909;8.36e-14;2!DOID:3030;1.79e-07;1!DOID:3112;1.79e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.82e-16,14;DOID:1909,1.12e-13,2;DOID:0050687,2.61e-09,143;DOID:3112,1.07e-07,1;DOID:3030,1.91e-07,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;7.50e-08;1!UBERON:0001256;7.50e-08;1!UBERON:0001259;7.50e-08;1!UBERON:0003343;3.03e-07;4!UBERON:0004785;3.03e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,8.28e-08,1;UBERON:0001256,8.28e-08,1;UBERON:0001259,8.28e-08,1;UBERON:0003343,2.89e-07,4;UBERON:0004785,2.89e-07,4 | |||
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| ||
|short_description=p@chr12:85304957..85304960,- | |||
}} | }} |
Latest revision as of 13:03, 24 July 2015
Short description: | p@chr12:85304957..85304960, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:85304957..85304960, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.46e-09 | 3 |
branched duct epithelial cell | 1.46e-09 | 3 |
tracheal epithelial cell | 1.46e-09 | 3 |
tracheoblast | 1.46e-09 | 3 |
bladder cell | 8.28e-08 | 1 |
lower urinary tract cell | 8.28e-08 | 1 |
respiratory epithelial cell | 8.58e-08 | 13 |
multinucleate cell | 1.15e-07 | 1 |
myotube | 1.15e-07 | 1 |
mucus secreting cell | 1.91e-07 | 1 |
smooth muscle cell of the pulmonary artery | 2.47e-07 | 1 |
epithelial cell of tracheobronchial tree | 8.21e-07 | 9 |
epithelial cell of lower respiratory tract | 8.21e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 8.28e-08 | 1 |
wall of urinary bladder | 8.28e-08 | 1 |
mucosa of urinary bladder | 8.28e-08 | 1 |
mucosa of oral region | 2.89e-07 | 4 |
respiratory system mucosa | 2.89e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.82e-16 | 14 |
melanoma | 1.12e-13 | 2 |
cell type cancer | 2.61e-09 | 143 |
papillary adenocarcinoma | 1.07e-07 | 1 |
mucinous adenocarcinoma | 1.91e-07 | 1 |