FFCP PHASE1:Hg19::chr12:78359873..78359882,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:78359873..78359882,+
|short_description=p41@NAV3
|description=CAGE_peak_41_at_NAV3_5end
|association_with_transcript=-173bp_to_ENST00000547725,ENST0000055...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-173bp_to_ENST00000547725,ENST00000550503_5end | |||
|cluster_id=chr12:78359873..78359882,+ | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_41_at_NAV3_5end | |||
|id=chr12:78359873..78359882,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.55e-98;1!UBERON:0003056;5.04e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.82e-76!57;UBERON:0005068!1.82e-76!57;UBERON:0006241!1.82e-76!57;UBERON:0007135!1.82e-76!57;UBERON:0002616!2.80e-57!59;UBERON:0001017!1.46e-55!82;UBERON:0002020!2.60e-55!34;UBERON:0003528!2.60e-55!34;UBERON:0005743!8.09e-53!86;UBERON:0000955!4.11e-52!69;UBERON:0006238!4.11e-52!69;UBERON:0000073!2.37e-51!94;UBERON:0001016!2.37e-51!94;UBERON:0002780!2.62e-51!41;UBERON:0001890!2.62e-51!41;UBERON:0006240!2.62e-51!41;UBERON:0002791!6.98e-51!33;UBERON:0003080!5.00e-50!42;UBERON:0003075!2.11e-49!86;UBERON:0007284!2.11e-49!86;UBERON:0001893!2.47e-49!34;UBERON:0002346!5.08e-47!90;UBERON:0001950!2.32e-41!20;UBERON:0001869!2.66e-40!32;UBERON:0007023!2.77e-39!115;UBERON:0002619!1.41e-37!22;UBERON:0003056!1.53e-33!61;UBERON:0000956!5.48e-33!25;UBERON:0000203!5.48e-33!25;UBERON:0002298!4.69e-29!8;UBERON:0000153!1.56e-28!129;UBERON:0007811!1.56e-28!129;UBERON:0000033!1.37e-27!123;UBERON:0003076!4.32e-27!15;UBERON:0003057!4.32e-27!15;UBERON:0004121!8.48e-27!169;UBERON:0000924!4.49e-26!173;UBERON:0006601!4.49e-26!173;UBERON:0002308!3.36e-25!9;UBERON:0000125!3.36e-25!9;UBERON:0002240!8.47e-21!3;UBERON:0000988!2.44e-20!3;UBERON:0001871!3.02e-20!7;UBERON:0006331!3.86e-20!3;UBERON:0002771!4.12e-20!3;UBERON:0000025!2.48e-19!194;UBERON:0002420!7.12e-18!9;UBERON:0007245!7.12e-18!9;UBERON:0010009!7.12e-18!9;UBERON:0010011!7.12e-18!9;UBERON:0000454!7.12e-18!9;UBERON:0004732!7.42e-18!13;UBERON:0000200!2.13e-17!6;UBERON:0000369!6.78e-15!4;UBERON:0002435!6.78e-15!4;UBERON:0000204!6.78e-15!4;UBERON:0010082!6.78e-15!4;UBERON:0009663!7.31e-15!7;UBERON:0005162!7.36e-15!2;UBERON:0000122!7.36e-15!2;UBERON:0004111!1.33e-14!241;UBERON:0002148!5.81e-14!2;UBERON:0009662!5.81e-14!2;UBERON:0004733!1.51e-13!12;UBERON:0002028!1.51e-13!12;UBERON:0007277!1.51e-13!12;UBERON:0005174!1.06e-12!5;UBERON:0001137!1.06e-12!5;UBERON:0002021!4.30e-12!5;UBERON:0000477!1.62e-11!286;UBERON:0000483!2.78e-10!309;UBERON:0000119!3.91e-10!312;UBERON:0000064!8.26e-10!219;UBERON:0000475!9.20e-10!365;UBERON:0001896!9.72e-10!3;UBERON:0005290!9.72e-10!3;UBERON:0010096!9.72e-10!3;UBERON:0005383!2.62e-09!3;UBERON:0005382!2.62e-09!3;UBERON:0002336!2.70e-08!1;UBERON:0001018!2.70e-08!1;UBERON:0002473!2.70e-08!1;UBERON:0005340!2.70e-08!1;UBERON:0002316!2.70e-08!1;UBERON:0003544!2.70e-08!1;UBERON:0001020!2.70e-08!1;UBERON:0005970!2.70e-08!1;UBERON:0002437!2.70e-08!1;UBERON:0000941!2.89e-08!1;UBERON:0004904!2.89e-08!1;UBERON:0002464!2.89e-08!1;UBERON:0001021!2.89e-08!1;UBERON:0001785!2.89e-08!1;UBERON:0002038!6.52e-08!1;UBERON:0009661!6.52e-08!1;UBERON:0001882!6.97e-08!1;UBERON:0005403!6.97e-08!1;UBERON:0001874!1.11e-07!1;UBERON:0002581!1.35e-07!1;UBERON:0002902!1.75e-07!1;UBERON:0009899!1.75e-07!1;UBERON:0002022!1.99e-07!1;UBERON:0002680!4.14e-07!9;UBERON:0001895!4.14e-07!9;UBERON:0010092!4.14e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0005162;3.29e-195;2!UBERON:0000122;3.29e-195;2!UBERON:0002336;1.55e-98;1!UBERON:0000941;1.55e-98;1!UBERON:0001785;1.55e-98;1!UBERON:0002464;1.55e-98;1!UBERON:0004904;1.55e-98;1!UBERON:0011215;1.55e-98;1!UBERON:0001018;1.55e-98;1!UBERON:0001021;1.55e-98;1!UBERON:0002473;1.55e-98;1!UBERON:0005340;1.55e-98;1!UBERON:0003544;1.55e-98;1!UBERON:0005970;1.55e-98;1!UBERON:0002316;1.55e-98;1!UBERON:0001020;1.55e-98;1!UBERON:0002437;1.55e-98;1!UBERON:0003714;3.52e-50;2!UBERON:0000010;2.31e-12;8!UBERON:0004732;5.49e-09;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,3.29e-195,2;UBERON:0000122,3.29e-195,2;UBERON:0002336,9.37e-99,1;UBERON:0011215,9.37e-99,1;UBERON:0001018,9.37e-99,1;UBERON:0002473,9.37e-99,1;UBERON:0005340,9.37e-99,1;UBERON:0003544,9.37e-99,1;UBERON:0005970,9.37e-99,1;UBERON:0002316,9.37e-99,1;UBERON:0001020,9.37e-99,1;UBERON:0002437,9.37e-99,1;UBERON:0000941,2.55e-98,1;UBERON:0001785,2.55e-98,1;UBERON:0002464,2.55e-98,1;UBERON:0004904,2.55e-98,1;UBERON:0001021,2.55e-98,1;UBERON:0003902,2.55e-98,1;UBERON:0005425,2.55e-98,1;UBERON:0003714,4.52e-50,2;UBERON:0001781,7.14e-26,4;UBERON:0000966,9.07e-18,6;UBERON:0005388,9.07e-18,6;UBERON:0001802,9.07e-18,6;UBERON:0000010,2.45e-12,8;UBERON:0004732,5.70e-09,13;UBERON:0003056,1.20e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55022605855557,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.221858103073705,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620597975171371,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55022605855557,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.221858103073705,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620597975171371,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p41@NAV3 | |||
}} | }} |
Latest revision as of 22:41, 24 September 2015
Short description: | p41@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_41_at_NAV3_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | -173bp_to_ENST00000547725, ENST00000550503_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 3.29e-195 | 2 |
neuron projection bundle | 3.29e-195 | 2 |
corpus callosum | 9.37e-99 | 1 |
central nervous system cell part cluster | 9.37e-99 | 1 |
axon tract | 9.37e-99 | 1 |
intercerebral commissure | 9.37e-99 | 1 |
dorsal telencephalic commissure | 9.37e-99 | 1 |
brain white matter | 9.37e-99 | 1 |
brain commissure | 9.37e-99 | 1 |
white matter | 9.37e-99 | 1 |
nervous system commissure | 9.37e-99 | 1 |
cerebral hemisphere white matter | 9.37e-99 | 1 |
cranial nerve II | 2.55e-98 | 1 |
cranial nerve | 2.55e-98 | 1 |
nerve trunk | 2.55e-98 | 1 |
nerve connecting eye with brain | 2.55e-98 | 1 |
nerve | 2.55e-98 | 1 |
retinal neural layer | 2.55e-98 | 1 |
presumptive neural retina | 2.55e-98 | 1 |
neural tissue | 4.52e-50 | 2 |
layer of retina | 7.14e-26 | 4 |
retina | 9.07e-18 | 6 |
photoreceptor array | 9.07e-18 | 6 |
posterior segment of eyeball | 9.07e-18 | 6 |
peripheral nervous system | 2.45e-12 | 8 |
segmental subdivision of nervous system | 5.70e-09 | 13 |
pre-chordal neural plate | 1.20e-07 | 61 |