FFCP PHASE1:Hg19::chr1:25228796..25228804,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:25228796..25228804,- | |||
|coexpression_cluster_id=C916 | |||
|description=CAGE_peak_at_chr1:25228796..25228804,- | |description=CAGE_peak_at_chr1:25228796..25228804,- | ||
|id=chr1:25228796..25228804,- | |id=chr1:25228796..25228804,- | ||
|ontology_enrichment_celltype=CL:0000738!1.25e-40!140;CL:0002087!6.95e-38!119;CL:0000037!5.64e-35!172;CL:0000566!5.64e-35!172;CL:0002031!7.53e-35!124;CL:0000988!7.32e-34!182;CL:0002032!1.30e-33!165;CL:0000837!1.30e-33!165;CL:0000542!5.76e-23!53;CL:0000051!5.76e-23!53;CL:0002057!7.85e-23!42;CL:0000838!5.03e-22!52;CL:0000860!1.24e-20!45;CL:0000766!1.17e-14!76;CL:0000557!5.07e-14!71;CL:0000839!2.20e-13!70;CL:0002009!4.85e-13!65;CL:0000763!6.05e-13!112;CL:0000049!6.05e-13!112;CL:0002194!9.54e-13!63;CL:0000576!9.54e-13!63;CL:0000040!9.54e-13!63;CL:0000559!9.54e-13!63;CL:0000084!1.42e-10!25;CL:0000827!1.42e-10!25;CL:0000134!1.10e-09!358;CL:0002320!1.67e-09!365;CL:0000945!2.48e-09!24;CL:0000826!2.48e-09!24;CL:0000219!2.60e-09!390;CL:0000791!3.28e-09!18;CL:0000789!3.28e-09!18;CL:0002420!3.28e-09!18;CL:0002419!3.28e-09!18;CL:0000790!3.28e-09!18 | |ontology_enrichment_celltype=CL:0000738!1.25e-40!140;CL:0002087!6.95e-38!119;CL:0000037!5.64e-35!172;CL:0000566!5.64e-35!172;CL:0002031!7.53e-35!124;CL:0000988!7.32e-34!182;CL:0002032!1.30e-33!165;CL:0000837!1.30e-33!165;CL:0000542!5.76e-23!53;CL:0000051!5.76e-23!53;CL:0002057!7.85e-23!42;CL:0000838!5.03e-22!52;CL:0000860!1.24e-20!45;CL:0000766!1.17e-14!76;CL:0000557!5.07e-14!71;CL:0000839!2.20e-13!70;CL:0002009!4.85e-13!65;CL:0000763!6.05e-13!112;CL:0000049!6.05e-13!112;CL:0002194!9.54e-13!63;CL:0000576!9.54e-13!63;CL:0000040!9.54e-13!63;CL:0000559!9.54e-13!63;CL:0000084!1.42e-10!25;CL:0000827!1.42e-10!25;CL:0000134!1.10e-09!358;CL:0002320!1.67e-09!365;CL:0000945!2.48e-09!24;CL:0000826!2.48e-09!24;CL:0000219!2.60e-09!390;CL:0000791!3.28e-09!18;CL:0000789!3.28e-09!18;CL:0002420!3.28e-09!18;CL:0002419!3.28e-09!18;CL:0000790!3.28e-09!18 | ||
|ontology_enrichment_celltype_v019=CL:0000623;5.58e-19;3!CL:0000860;6.34e-19;33!CL:0002057;6.34e-19;33!CL:0000473;2.16e-12;39!CL:0000234;2.16e-12;39!CL:0000576;2.34e-12;48!CL:0000766;8.37e-09;69!CL:0002087;3.73e-08;104!CL:0000738;9.67e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.22e-26,136;CL:0002087,2.07e-24,115;CL:0002031,2.91e-23,120;CL:0000860,3.73e-21,42;CL:0002057,3.73e-21,42;CL:0000037,3.06e-20,168;CL:0002032,1.42e-19,161;CL:0000837,1.42e-19,161;CL:0000623,2.88e-19,3;CL:0000825,2.88e-19,3;CL:0000988,6.04e-19,177;CL:0000473,3.47e-18,48;CL:0000234,3.47e-18,48;CL:0000766,3.80e-15,72;CL:0000839,2.07e-14,66;CL:0000557,3.71e-14,67;CL:0002194,4.95e-14,59;CL:0000576,4.95e-14,59;CL:0000040,4.95e-14,59;CL:0000559,4.95e-14,59;CL:0002009,1.70e-13,61;CL:0000763,1.40e-10,108;CL:0000049,1.40e-10,108;CL:0000838,1.17e-09,52;CL:0000542,1.92e-09,53;CL:0000051,1.92e-09,53;CL:0000134,1.41e-07,354;CL:0002320,2.53e-07,361;CL:0000219,3.42e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;3.80e-17;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.75e-20!102;UBERON:0003061!2.75e-20!102;UBERON:0002193!5.71e-18!112;UBERON:0002371!3.91e-12!80;UBERON:0001474!2.74e-11!86;UBERON:0004765!4.25e-10!101;UBERON:0001434!4.25e-10!101;UBERON:0002405!8.46e-10!115;UBERON:0002384!4.93e-09!375;UBERON:0000178!9.41e-07!15;UBERON:0000179!9.41e-07!15;UBERON:0000463!9.41e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;3.72e-07;1!UBERON:0006518;3.72e-07;1!UBERON:0008949;3.72e-07;1!UBERON:0000101;3.72e-07;1!UBERON:0002167;3.72e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.15e-13,98;UBERON:0003061,1.15e-13,98;UBERON:0002371,3.58e-12,76;UBERON:0002193,4.36e-12,108;UBERON:0001474,4.33e-11,82;UBERON:0004765,7.17e-10,90;UBERON:0002405,1.81e-09,93;UBERON:0001434,1.27e-08,100;UBERON:0002171,4.08e-07,1;UBERON:0006518,4.08e-07,1;UBERON:0008949,4.08e-07,1;UBERON:0000101,4.08e-07,1;UBERON:0002167,4.08e-07,1;UBERON:0002384,5.62e-07,371 | |||
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|short_description=p@chr1:25228796..25228804,- | |short_description=p@chr1:25228796..25228804,- | ||
}} | }} |
Latest revision as of 06:21, 28 July 2015
Short description: | p@chr1:25228796..25228804, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:25228796..25228804, - |
Coexpression cluster: | C916_Natural_CD8_CD14_Basophils_Whole_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.22e-26 | 136 |
nongranular leukocyte | 2.07e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 2.91e-23 | 120 |
classical monocyte | 3.73e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.73e-21 | 42 |
hematopoietic stem cell | 3.06e-20 | 168 |
hematopoietic oligopotent progenitor cell | 1.42e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.42e-19 | 161 |
natural killer cell | 2.88e-19 | 3 |
pro-NK cell | 2.88e-19 | 3 |
hematopoietic cell | 6.04e-19 | 177 |
defensive cell | 3.47e-18 | 48 |
phagocyte | 3.47e-18 | 48 |
myeloid leukocyte | 3.80e-15 | 72 |
myeloid lineage restricted progenitor cell | 2.07e-14 | 66 |
granulocyte monocyte progenitor cell | 3.71e-14 | 67 |
monopoietic cell | 4.95e-14 | 59 |
monocyte | 4.95e-14 | 59 |
monoblast | 4.95e-14 | 59 |
promonocyte | 4.95e-14 | 59 |
macrophage dendritic cell progenitor | 1.70e-13 | 61 |
myeloid cell | 1.40e-10 | 108 |
common myeloid progenitor | 1.40e-10 | 108 |
lymphoid lineage restricted progenitor cell | 1.17e-09 | 52 |
lymphocyte | 1.92e-09 | 53 |
common lymphoid progenitor | 1.92e-09 | 53 |
mesenchymal cell | 1.41e-07 | 354 |
connective tissue cell | 2.53e-07 | 361 |
motile cell | 3.42e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.15e-13 | 98 |
blood island | 1.15e-13 | 98 |
bone marrow | 3.58e-12 | 76 |
hemolymphoid system | 4.36e-12 | 108 |
bone element | 4.33e-11 | 82 |
skeletal element | 7.17e-10 | 90 |
immune system | 1.81e-09 | 93 |
skeletal system | 1.27e-08 | 100 |
lower lobe of right lung | 4.08e-07 | 1 |
right lung lobe | 4.08e-07 | 1 |
lower lobe of lung | 4.08e-07 | 1 |
lobe of lung | 4.08e-07 | 1 |
right lung | 4.08e-07 | 1 |
connective tissue | 5.62e-07 | 371 |