FFCP PHASE1:Hg19::chr1:245214949..245214973,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:245214949..245214973,+ | |||
|coexpression_cluster_id=C344 | |||
|description=CAGE_peak_at_chr1:245214949..245214973,+ | |description=CAGE_peak_at_chr1:245214949..245214973,+ | ||
|id=chr1:245214949..245214973,+ | |id=chr1:245214949..245214973,+ | ||
|ontology_enrichment_celltype=CL:0000763!4.29e-30!112;CL:0000049!4.29e-30!112;CL:0000766!1.12e-29!76;CL:0002194!1.35e-23!63;CL:0000576!1.35e-23!63;CL:0000040!1.35e-23!63;CL:0000559!1.35e-23!63;CL:0002009!1.40e-22!65;CL:0000037!3.17e-22!172;CL:0000566!3.17e-22!172;CL:0002057!1.11e-21!42;CL:0000557!1.79e-21!71;CL:0000839!2.69e-20!70;CL:0000988!4.02e-20!182;CL:0000860!9.73e-20!45;CL:0002032!1.10e-17!165;CL:0000837!1.10e-17!165;CL:0000738!3.86e-17!140;CL:0000094!1.64e-12!8;CL:0002087!3.27e-12!119;CL:0002031!4.45e-09!124;CL:0000081!1.02e-08!11;CL:0000775!1.43e-07!3 | |ontology_enrichment_celltype=CL:0000763!4.29e-30!112;CL:0000049!4.29e-30!112;CL:0000766!1.12e-29!76;CL:0002194!1.35e-23!63;CL:0000576!1.35e-23!63;CL:0000040!1.35e-23!63;CL:0000559!1.35e-23!63;CL:0002009!1.40e-22!65;CL:0000037!3.17e-22!172;CL:0000566!3.17e-22!172;CL:0002057!1.11e-21!42;CL:0000557!1.79e-21!71;CL:0000839!2.69e-20!70;CL:0000988!4.02e-20!182;CL:0000860!9.73e-20!45;CL:0002032!1.10e-17!165;CL:0000837!1.10e-17!165;CL:0000738!3.86e-17!140;CL:0000094!1.64e-12!8;CL:0002087!3.27e-12!119;CL:0002031!4.45e-09!124;CL:0000081!1.02e-08!11;CL:0000775!1.43e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000775;5.96e-19;3!CL:0000094;1.09e-18;8!CL:0000860;2.93e-18;33!CL:0002057;2.93e-18;33!CL:0000473;9.98e-17;39!CL:0000234;9.98e-17;39!CL:0000081;1.53e-13;11!CL:0000771;8.03e-13;2!CL:0000763;6.60e-10;100!CL:0000576;1.53e-09;48!CL:0000766;2.56e-08;69!CL:0002032;5.84e-07;1!CL:0000557;5.84e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,8.77e-27,108;CL:0000049,8.77e-27,108;CL:0000766,3.00e-20,72;CL:0000775,4.98e-19,3;CL:0000094,8.40e-19,8;CL:0002032,2.13e-16,161;CL:0000837,2.13e-16,161;CL:0000473,9.89e-16,48;CL:0000234,9.89e-16,48;CL:0000037,1.64e-15,168;CL:0000860,2.03e-15,42;CL:0002057,2.03e-15,42;CL:0000988,1.78e-14,177;CL:0000081,1.27e-13,11;CL:0000771,6.32e-13,2;CL:0000557,2.82e-12,67;CL:0002194,4.08e-12,59;CL:0000576,4.08e-12,59;CL:0000040,4.08e-12,59;CL:0000559,4.08e-12,59;CL:0002009,1.19e-11,61;CL:0000839,1.32e-10,66;CL:0000738,3.99e-09,136 | |||
|ontology_enrichment_development_v019=CL:0002057;2.91e-12;42!CL:0000049;1.10e-08;108 | |||
|ontology_enrichment_disease=DOID:8692!7.97e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:225;3.62e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:225,3.62e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-34!102;UBERON:0003061!1.04e-34!102;UBERON:0002193!2.70e-33!112;UBERON:0002371!2.32e-19!80;UBERON:0002405!3.92e-19!115;UBERON:0001474!2.52e-17!86;UBERON:0000178!9.55e-17!15;UBERON:0000179!9.55e-17!15;UBERON:0000463!9.55e-17!15;UBERON:0004765!2.47e-13!101;UBERON:0001434!2.47e-13!101;UBERON:0007023!5.23e-12!115;UBERON:0003081!1.07e-11!216 | |ontology_enrichment_uberon=UBERON:0002390!1.04e-34!102;UBERON:0003061!1.04e-34!102;UBERON:0002193!2.70e-33!112;UBERON:0002371!2.32e-19!80;UBERON:0002405!3.92e-19!115;UBERON:0001474!2.52e-17!86;UBERON:0000178!9.55e-17!15;UBERON:0000179!9.55e-17!15;UBERON:0000463!9.55e-17!15;UBERON:0004765!2.47e-13!101;UBERON:0001434!2.47e-13!101;UBERON:0007023!5.23e-12!115;UBERON:0003081!1.07e-11!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.36e-18;15!UBERON:0000179;5.36e-18;15!UBERON:0000463;5.36e-18;15!UBERON:0002390;4.38e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.26e-19,98;UBERON:0003061,1.26e-19,98;UBERON:0000178,5.37e-18,15;UBERON:0000179,5.37e-18,15;UBERON:0000463,5.37e-18,15;UBERON:0002193,1.94e-17,108;UBERON:0002371,1.53e-10,76;UBERON:0001474,1.35e-09,82;UBERON:0004765,1.57e-08,90;UBERON:0003081,2.31e-08,203;UBERON:0002405,3.54e-08,93;UBERON:0001434,1.94e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0.587200878669695,0.553995408531877,0,0.434021741431704,0,0.32389366601898,0,0.726991193897824,0,0,0.232429036905685,0,0,4.31538588483226,5.12321413058201,6.85798466676897,0,1.29096936716765,0,0.564727018627814,0,0.224723484445085,0,0.320929027076094,0,5.93732340336089,4.78712778291916,6.39337125799041,0.290209238628584,0,0.622822248995575,7.78870862295904,3.12889751052121,10.8594422352558,0,0,0,0,0,0.209658645508376,0.898629049171961,0.901061357049038,3.05378614724452,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797747763113191,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24304916763028,2.99161459204025,10.7748033493369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,3.55213326462519,1.52927441428475,2.27858874869665,0.238231775457789,0.822724546172388,2.59389324477087,1.08006287447623,1.58625035258854,0,0,0,0,0,0,0,0,0,0,9.41403626796211,0,0,1.09675927041116,0,0,3.53293765228139,10.4935847739345,0.425846237690326,1.37402137902306,0.614481528616916,0.894704431569664,0.667396566847634,6.05703095746325,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,1.27746588066972,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0.157566364614447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.320362237703084,0,0.828478110694391,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.124192805882767,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,2.56060151265938,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.310298987585686,0,0,0.129177819672012,0.124149428591716,0,0,0,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0.587200878669695,0.553995408531877,0,0.434021741431704,0,0.32389366601898,0,0.726991193897824,0,0,0.232429036905685,0,0,4.31538588483226,5.12321413058201,6.85798466676897,0,1.29096936716765,0,0.564727018627814,0,0.224723484445085,0,0.320929027076094,0,5.93732340336089,4.78712778291916,6.39337125799041,0.290209238628584,0,0.622822248995575,7.78870862295904,3.12889751052121,10.8594422352558,0,0,0,0,0,0.209658645508376,0.898629049171961,0.901061357049038,3.05378614724452,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797747763113191,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24304916763028,2.99161459204025,10.7748033493369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,3.55213326462519,1.52927441428475,2.27858874869665,0.238231775457789,0.822724546172388,2.59389324477087,1.08006287447623,1.58625035258854,0,0,0,0,0,0,0,0,0,0,9.41403626796211,0,0,1.09675927041116,0,0,3.53293765228139,10.4935847739345,0.425846237690326,1.37402137902306,0.614481528616916,0.894704431569664,0.667396566847634,6.05703095746325,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,1.27746588066972,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0.157566364614447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.320362237703084,0,0.828478110694391,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.124192805882767,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,2.56060151265938,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.310298987585686,0,0,0.129177819672012,0.124149428591716,0,0,0,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:245214949..245214973,+ | |short_description=p@chr1:245214949..245214973,+ | ||
}} | }} |
Latest revision as of 06:01, 28 July 2015
Short description: | p@chr1:245214949..245214973, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:245214949..245214973, + |
Coexpression cluster: | C344_Neutrophils_CD14_Eosinophils_Whole_blood_CD14CD16_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 8.77e-27 | 108 |
common myeloid progenitor | 8.77e-27 | 108 |
myeloid leukocyte | 3.00e-20 | 72 |
neutrophil | 4.98e-19 | 3 |
granulocyte | 8.40e-19 | 8 |
hematopoietic oligopotent progenitor cell | 2.13e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-16 | 161 |
defensive cell | 9.89e-16 | 48 |
phagocyte | 9.89e-16 | 48 |
hematopoietic stem cell | 1.64e-15 | 168 |
classical monocyte | 2.03e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.03e-15 | 42 |
hematopoietic cell | 1.78e-14 | 177 |
blood cell | 1.27e-13 | 11 |
eosinophil | 6.32e-13 | 2 |
granulocyte monocyte progenitor cell | 2.82e-12 | 67 |
monopoietic cell | 4.08e-12 | 59 |
monocyte | 4.08e-12 | 59 |
monoblast | 4.08e-12 | 59 |
promonocyte | 4.08e-12 | 59 |
macrophage dendritic cell progenitor | 1.19e-11 | 61 |
myeloid lineage restricted progenitor cell | 1.32e-10 | 66 |
leukocyte | 3.99e-09 | 136 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.26e-19 | 98 |
blood island | 1.26e-19 | 98 |
blood | 5.37e-18 | 15 |
haemolymphatic fluid | 5.37e-18 | 15 |
organism substance | 5.37e-18 | 15 |
hemolymphoid system | 1.94e-17 | 108 |
bone marrow | 1.53e-10 | 76 |
bone element | 1.35e-09 | 82 |
skeletal element | 1.57e-08 | 90 |
lateral plate mesoderm | 2.31e-08 | 203 |
immune system | 3.54e-08 | 93 |
skeletal system | 1.94e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
syndrome | 3.62e-07 | 1 |