FFCP PHASE1:Hg19::chr12:71833756..71833769,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:71833756..71833769,+
|short_description=p2@LGR5
|description=CAGE_peak_2_at_LGR5_5end
|association_with_transcript=0bp_to_ENST00000550851_5end
|EntrezGen...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8549 | |EntrezGene=8549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4504 | |HGNC=4504 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000550851_5end | |||
|cluster_id=chr12:71833756..71833769,+ | |||
|description=CAGE_peak_2_at_LGR5_5end | |||
|id=chr12:71833756..71833769,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000346;3.92e-10;3!CL:1000428;3.92e-10;3!CL:0000817;1.17e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,3.27e-10,3;CL:1000428,3.27e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;3.92e-10;3!UBERON:0003057;3.92e-10;3!UBERON:0006601;4.29e-09;82!UBERON:0003124;3.20e-08;1!UBERON:0005425;3.20e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.37e-33!115;UBERON:0001049!1.70e-27!57;UBERON:0005068!1.70e-27!57;UBERON:0006241!1.70e-27!57;UBERON:0007135!1.70e-27!57;UBERON:0002780!1.35e-23!41;UBERON:0001890!1.35e-23!41;UBERON:0006240!1.35e-23!41;UBERON:0000073!2.29e-23!94;UBERON:0001016!2.29e-23!94;UBERON:0003080!8.07e-23!42;UBERON:0003075!5.02e-22!86;UBERON:0007284!5.02e-22!86;UBERON:0002346!1.56e-21!90;UBERON:0000955!4.40e-21!69;UBERON:0006238!4.40e-21!69;UBERON:0002616!4.41e-21!59;UBERON:0001017!5.37e-21!82;UBERON:0005743!1.29e-20!86;UBERON:0003056!3.32e-20!61;UBERON:0002020!7.05e-20!34;UBERON:0003528!7.05e-20!34;UBERON:0001893!8.05e-20!34;UBERON:0002791!1.25e-18!33;UBERON:0001869!3.10e-17!32;UBERON:0004121!6.84e-15!169;UBERON:0000924!7.53e-15!173;UBERON:0006601!7.53e-15!173;UBERON:0000153!2.74e-14!129;UBERON:0007811!2.74e-14!129;UBERON:0000033!5.15e-14!123;UBERON:0002308!1.13e-13!9;UBERON:0000125!1.13e-13!9;UBERON:0001950!2.15e-13!20;UBERON:0002619!7.67e-12!22;UBERON:0009663!1.20e-10!7;UBERON:0002420!1.65e-10!9;UBERON:0007245!1.65e-10!9;UBERON:0010009!1.65e-10!9;UBERON:0010011!1.65e-10!9;UBERON:0000454!1.65e-10!9;UBERON:0000956!5.63e-10!25;UBERON:0000203!5.63e-10!25;UBERON:0000200!1.72e-09!6;UBERON:0000475!1.80e-09!365;UBERON:0000025!4.33e-08!194;UBERON:0000483!9.36e-08!309;UBERON:0002298!1.25e-07!8;UBERON:0000119!1.64e-07!312;UBERON:0005174!1.81e-07!5;UBERON:0001137!1.81e-07!5;UBERON:0000477!9.83e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000988;3.19e-21;3!UBERON:0002298;1.49e-18;6!UBERON:0002148;9.61e-15;2!UBERON:0005162;9.61e-15;2!UBERON:0000122;9.61e-15;2!UBERON:0006331;9.61e-15;2!UBERON:0009662;9.61e-15;2!UBERON:0004732;4.45e-13;13!UBERON:0000125;1.94e-12;9!UBERON:0002308;1.94e-12;9!UBERON:0000073;9.05e-11;53!UBERON:0002616;9.05e-11;53!UBERON:0002240;3.92e-10;3!UBERON:0005174;3.92e-10;3!UBERON:0000412;3.92e-10;3!UBERON:0001992;3.92e-10;3!UBERON:0001137;3.92e-10;3!UBERON:0003528;1.06e-09;34!UBERON:0002020;1.06e-09;34!UBERON:0004733;2.29e-09;12!UBERON:0002028;2.29e-09;12!UBERON:0002780;7.73e-09;41!UBERON:0001890;7.73e-09;41!UBERON:0001016;2.77e-08;83!UBERON:0002336;3.20e-08;1!UBERON:0002038;3.20e-08;1!UBERON:0000941;3.20e-08;1!UBERON:0001785;3.20e-08;1!UBERON:0002464;3.20e-08;1!UBERON:0004904;3.20e-08;1!UBERON:0011215;3.20e-08;1!UBERON:0001018;3.20e-08;1!UBERON:0001021;3.20e-08;1!UBERON:0009661;3.20e-08;1!UBERON:0002950;3.20e-08;1!UBERON:0002473;3.20e-08;1!UBERON:0005340;3.20e-08;1!UBERON:0003544;3.20e-08;1!UBERON:0005970;3.20e-08;1!UBERON:0002316;3.20e-08;1!UBERON:0001020;3.20e-08;1!UBERON:0001891;3.20e-08;1!UBERON:0002437;3.20e-08;1!UBERON:0001893;3.96e-08;34!UBERON:0002680;2.02e-07;9!UBERON:0002420;2.02e-07;9!UBERON:0007245;2.02e-07;9!UBERON:0010009;2.02e-07;9!UBERON:0000010;2.02e-07;8!UBERON:0001895;2.02e-07;9!UBERON:0010011;2.02e-07;9!UBERON:0000454;2.02e-07;9!UBERON:0002791;2.19e-07;32!UBERON:0007023;7.58e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.35e-21,3;UBERON:0001049,4.06e-21,56;UBERON:0005068,4.06e-21,56;UBERON:0006241,4.06e-21,56;UBERON:0007135,4.06e-21,56;UBERON:0001016,8.85e-21,89;UBERON:0002298,7.53e-19,6;UBERON:0003076,2.67e-16,15;UBERON:0003057,2.67e-16,15;UBERON:0000073,3.09e-16,53;UBERON:0002616,3.09e-16,53;UBERON:0001017,6.79e-16,81;UBERON:0003075,8.01e-16,82;UBERON:0007284,8.01e-16,82;UBERON:0010371,1.08e-15,104;UBERON:0010314,4.01e-15,132;UBERON:0002148,5.52e-15,2;UBERON:0005162,5.52e-15,2;UBERON:0000122,5.52e-15,2;UBERON:0006331,5.52e-15,2;UBERON:0009662,5.52e-15,2;UBERON:0002346,5.82e-15,86;UBERON:0000955,2.77e-14,68;UBERON:0006238,2.77e-14,68;UBERON:0007023,3.45e-14,114;UBERON:0004732,3.32e-13,13;UBERON:0000125,1.00e-12,9;UBERON:0002308,1.00e-12,9;UBERON:0004121,5.28e-12,171;UBERON:0000924,5.28e-12,171;UBERON:0006601,5.28e-12,171;UBERON:0003528,1.58e-11,34;UBERON:0002020,1.58e-11,34;UBERON:0002240,2.47e-10,3;UBERON:0005174,2.47e-10,3;UBERON:0001137,2.47e-10,3;UBERON:0000412,3.27e-10,3;UBERON:0001992,3.27e-10,3;UBERON:0004733,1.65e-09,12;UBERON:0002028,1.65e-09,12;UBERON:0007277,1.65e-09,12;UBERON:0002780,2.00e-09,41;UBERON:0001890,2.00e-09,41;UBERON:0003080,2.00e-09,41;UBERON:0006240,2.00e-09,41;UBERON:0001893,6.66e-09,34;UBERON:0002336,1.41e-08,1;UBERON:0011215,1.41e-08,1;UBERON:0001018,1.41e-08,1;UBERON:0002473,1.41e-08,1;UBERON:0005340,1.41e-08,1;UBERON:0003544,1.41e-08,1;UBERON:0005970,1.41e-08,1;UBERON:0002316,1.41e-08,1;UBERON:0001020,1.41e-08,1;UBERON:0002437,1.41e-08,1;UBERON:0002038,1.75e-08,1;UBERON:0009661,1.75e-08,1;UBERON:0002950,1.75e-08,1;UBERON:0001891,1.75e-08,1;UBERON:0009616,1.75e-08,1;UBERON:0010286,1.75e-08,1;UBERON:0011216,2.68e-08,223;UBERON:0000941,4.11e-08,1;UBERON:0001785,4.11e-08,1;UBERON:0002464,4.11e-08,1;UBERON:0004904,4.11e-08,1;UBERON:0001021,4.11e-08,1;UBERON:0003902,4.11e-08,1;UBERON:0005425,4.11e-08,1;UBERON:0003056,1.31e-07,61;UBERON:0002680,1.53e-07,9;UBERON:0001895,1.53e-07,9;UBERON:0010092,1.53e-07,9;UBERON:0002420,1.87e-07,9;UBERON:0007245,1.87e-07,9;UBERON:0010009,1.87e-07,9;UBERON:0010011,1.87e-07,9;UBERON:0000454,1.87e-07,9;UBERON:0000010,2.85e-07,8;UBERON:0002791,4.99e-07,32 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.579386075843295,0,0.486634870302636,0.283604451492204,0.443458794925128,0.43917392846563,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0.37223371266318,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,1.92972281457866,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.368965315629341,0,0,0,0,0,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16403819464667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,1.1253553312841,3.00533503561846,0,0,0.796991953004279,0,0,0,0,0.622079175323615,0,0,0,0.0986434056369336,0,0,1.93866549219044,0.556608588971108,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0.658156191461918,0,0,0,0.113942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0.247127877893006,0,1.95463285643963,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.821432273351958,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0.551482276150566,0.412079291905832,0.876246070104404,0,0,0,0,0,0,0,0,0,0.485996453264197,0,0,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,1.68067843270016,1.85125642439766,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0,0,0,0.314108192500469,2.65820453990096,0.610131324509816,0.500763722825999,0,0.776503360757966,1.73869928235874,0.138348634936231,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,1.07824811396682,0.157265941855896,1.52893493468819,0,0,0,0,0,0,0,0,0,0.963438376446893,1.41696576325585,0.798169295285756,0.615349092722265,0,0.138314504928436,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0.451261970095544,0.20170506870352,0,0,0,0.147856086217045,0.945526184657525,0,0.826747186004736,1.20490039368423,0,0,0.992422356778588,0.175871244359621,0.127762427639595,0,0,0.606965604236632,0.227662191351298,1.24183318227694,0,0,1.76721305739762,0.72350050919134,0,0,0,0.628462359664008,2.5224494698241,0,0,0,0.428859265059938,0,0,0.347716544605159,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,1.46301509978723,0,0.410651227424988,0,0.971421986118279,0,0,0,0,0,0,0.154348316215889,0.655678681511872,0,0,0,1.76677620403451,1.78227840196252,0.4226557275834,0,0,0,0,0,0,0,0,0,1.86341458096887,0.788857810965923,0.543931921527318,0,0,0,0.462175628631418,0,0,0,2.4072715192173,0,0,0,0,0.378893491091197,0,0.829169439458779,1.44806194206653,0.639701945702943,0,0,0.0620747142958579,1.6819779387092,0.0636471582781649,0,0,0.342233301085281,0.134704106029175,0.215166616178029,0.99798106963804,0,0,0,0.718601616852695,0,0.122241444182866,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.579386075843295,0,0.486634870302636,0.283604451492204,0.443458794925128,0.43917392846563,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0.37223371266318,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,1.92972281457866,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.368965315629341,0,0,0,0,0,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16403819464667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,1.1253553312841,3.00533503561846,0,0,0.796991953004279,0,0,0,0,0.622079175323615,0,0,0,0.0986434056369336,0,0,1.93866549219044,0.556608588971108,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0.658156191461918,0,0,0,0.113942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0.247127877893006,0,1.95463285643963,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.821432273351958,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0.551482276150566,0.412079291905832,0.876246070104404,0,0,0,0,0,0,0,0,0,0.485996453264197,0,0,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,1.68067843270016,1.85125642439766,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0,0,0,0.314108192500469,2.65820453990096,0.610131324509816,0.500763722825999,0,0.776503360757966,1.73869928235874,0.138348634936231,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,1.07824811396682,0.157265941855896,1.52893493468819,0,0,0,0,0,0,0,0,0,0.963438376446893,1.41696576325585,0.798169295285756,0.615349092722265,0,0.138314504928436,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0.451261970095544,0.20170506870352,0,0,0,0.147856086217045,0.945526184657525,0,0.826747186004736,1.20490039368423,0,0,0.992422356778588,0.175871244359621,0.127762427639595,0,0,0.606965604236632,0.227662191351298,1.24183318227694,0,0,1.76721305739762,0.72350050919134,0,0,0,0.628462359664008,2.5224494698241,0,0,0,0.428859265059938,0,0,0.347716544605159,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,1.46301509978723,0,0.410651227424988,0,0.971421986118279,0,0,0,0,0,0,0.154348316215889,0.655678681511872,0,0,0,1.76677620403451,1.78227840196252,0.4226557275834,0,0,0,0,0,0,0,0,0,1.86341458096887,0.788857810965923,0.543931921527318,0,0,0,0.462175628631418,0,0,0,2.4072715192173,0,0,0,0,0.378893491091197,0,0.829169439458779,1.44806194206653,0.639701945702943,0,0,0.0620747142958579,1.6819779387092,0.0636471582781649,0,0,0.342233301085281,0.134704106029175,0.215166616178029,0.99798106963804,0,0,0,0.718601616852695,0,0.122241444182866,0.406896178315738,0,0,0 | ||
|short_description=p2@LGR5 | |||
}} | }} |
Latest revision as of 17:02, 24 September 2015
Short description: | p2@LGR5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LGR5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000550851_5end |
EntrezGene: | LGR5 |
HGNC: | 4504 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 3.27e-10 | 3 |
stem cell of epidermis | 3.27e-10 | 3 |