FFCP PHASE1:Hg19::chr1:243433014..243433053,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:243433014..243433053,+ | |||
|coexpression_cluster_id=C430 | |||
|description=CAGE_peak_at_chr1:243433014..243433053,+ | |description=CAGE_peak_at_chr1:243433014..243433053,+ | ||
|id=chr1:243433014..243433053,+ | |id=chr1:243433014..243433053,+ | ||
|ontology_enrichment_celltype=CL:0000359!2.04e-15!32;CL:0000192!1.30e-10!42;CL:0000514!1.30e-10!42;CL:0002594!5.30e-10!4;CL:0000187!2.82e-07!54;CL:0000222!6.22e-07!119 | |ontology_enrichment_celltype=CL:0000359!2.04e-15!32;CL:0000192!1.30e-10!42;CL:0000514!1.30e-10!42;CL:0002594!5.30e-10!4;CL:0000187!2.82e-07!54;CL:0000222!6.22e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0002594;1.38e-44;4!CL:0002593;7.63e-23;2!CL:0000359;4.79e-16;32!CL:0002595;1.01e-09;5!CL:0000192;1.61e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002594,1.47e-44,4;CL:0002593,6.84e-23,2;CL:0000359,2.80e-16,32;CL:0000192,5.85e-12,43;CL:0000514,5.85e-12,43;CL:0002595,9.70e-10,5;CL:0000187,3.29e-09,55;CL:0000680,1.07e-08,58;CL:0000056,1.07e-08,58;CL:0000355,1.07e-08,58;CL:0000393,3.08e-08,61;CL:0000211,3.08e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;1.61e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3908;1.01e-09;5!DOID:4074;5.11e-07;2!DOID:4905;5.11e-07;2!DOID:3498;5.11e-07;2!DOID:3910;8.76e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,7.44e-10,5;DOID:4074,5.11e-07,2;DOID:4905,5.11e-07,2;DOID:3498,5.11e-07,2;DOID:3910,6.42e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.34e-10!84;UBERON:0001310!5.30e-10!4;UBERON:0004535!1.25e-09!110;UBERON:0001637!2.54e-09!42;UBERON:0003509!2.54e-09!42;UBERON:0004572!2.54e-09!42;UBERON:0001009!3.66e-09!113;UBERON:0000055!7.25e-09!69;UBERON:0002049!8.30e-09!79;UBERON:0007798!8.30e-09!79;UBERON:0001981!9.05e-09!60;UBERON:0007500!9.05e-09!60;UBERON:0004537!9.05e-09!60;UBERON:0006965!9.05e-09!60;UBERON:0003914!1.68e-08!118;UBERON:0000025!4.01e-08!194 | |ontology_enrichment_uberon=UBERON:0004872!1.34e-10!84;UBERON:0001310!5.30e-10!4;UBERON:0004535!1.25e-09!110;UBERON:0001637!2.54e-09!42;UBERON:0003509!2.54e-09!42;UBERON:0004572!2.54e-09!42;UBERON:0001009!3.66e-09!113;UBERON:0000055!7.25e-09!69;UBERON:0002049!8.30e-09!79;UBERON:0007798!8.30e-09!79;UBERON:0001981!9.05e-09!60;UBERON:0007500!9.05e-09!60;UBERON:0004537!9.05e-09!60;UBERON:0006965!9.05e-09!60;UBERON:0003914!1.68e-08!118;UBERON:0000025!4.01e-08!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0001310;1.38e-44;4!UBERON:0002456;7.63e-23;2!UBERON:0010260;4.86e-20;9!UBERON:0003834;1.01e-09;5!UBERON:0001533;1.01e-09;5!UBERON:0001637;2.25e-07;42!UBERON:0003509;2.25e-07;42!UBERON:0004572;2.25e-07;42!UBERON:0003513;3.45e-07;7!UBERON:0004903;8.76e-07;2!UBERON:0002173;8.76e-07;2!UBERON:0002186;8.76e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,1.47e-44,4;UBERON:0002456,6.84e-23,2;UBERON:0010260,4.99e-20,9;UBERON:0001637,2.94e-12,42;UBERON:0003509,2.94e-12,42;UBERON:0004572,2.94e-12,42;UBERON:0003834,9.70e-10,5;UBERON:0001533,9.70e-10,5;UBERON:0007500,1.54e-08,59;UBERON:0001981,1.54e-08,59;UBERON:0004537,1.54e-08,59;UBERON:0006965,1.54e-08,59;UBERON:0001134,4.29e-08,62;UBERON:0002036,4.29e-08,62;UBERON:0003082,4.29e-08,62;UBERON:0002385,8.06e-08,64;UBERON:0001015,8.06e-08,64;UBERON:0000383,8.06e-08,64;UBERON:0000055,2.55e-07,68;UBERON:0003513,3.35e-07,7;UBERON:0002329,5.55e-07,71;UBERON:0003059,5.55e-07,71;UBERON:0007282,5.55e-07,71;UBERON:0004290,5.55e-07,71;UBERON:0009618,5.55e-07,71;UBERON:0004903,6.42e-07,2;UBERON:0002173,6.42e-07,2;UBERON:0002186,6.42e-07,2;UBERON:0003077,7.09e-07,72;UBERON:0007285,7.09e-07,72;UBERON:0007524,8.99e-07,73 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0.975865597581014,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0.529636723252875,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0.538842688278752,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,1.03850885836724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0.37064843820784,0.286249773483982,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,0,0,0,0,0,0,0,1.70599442741899,1.05650146756755,0,0,0,0,0.66343897524122,0,0,0,3.24656603140326,1.54911749049875,1.12678241012897,0.286822704408103,0.0982490410131212,2.1400263088875,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,39.6038767134958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.293016358543788,0,0,1.98895302764489,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.808815160325942,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01175252462506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,0,0,0,0,0,0,0,0,0.39961921916426,0,0,0,0,28.0810730377877,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,1.25501137532991,0,0,0,0,0,0,0,0,0.410462603746695,0.170388021785422,0.453248366080503,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0.310874401165561,0.591420599958536,0.318593534327405,0.449803112163605,0,1.24411862352257,0,0,0,0,0,0.727394636810238,0.107410557042488,0,0,0,0,0,0,0,0.643324774124777,0.260994291965212,0.226705925512272,0.231522474323834,0,0,0,0,1.59020231351293,0,0.168942440653073,0,1.0362910251936,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646948868380091,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591424344868181,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16241425368125,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0.356760272332706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,2.4072715192173,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.359300808426348,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0.975865597581014,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0.529636723252875,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0.538842688278752,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,1.03850885836724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0.37064843820784,0.286249773483982,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,0,0,0,0,0,0,0,1.70599442741899,1.05650146756755,0,0,0,0,0.66343897524122,0,0,0,3.24656603140326,1.54911749049875,1.12678241012897,0.286822704408103,0.0982490410131212,2.1400263088875,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,39.6038767134958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.293016358543788,0,0,1.98895302764489,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.808815160325942,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01175252462506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,0,0,0,0,0,0,0,0,0.39961921916426,0,0,0,0,28.0810730377877,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,1.25501137532991,0,0,0,0,0,0,0,0,0.410462603746695,0.170388021785422,0.453248366080503,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0.310874401165561,0.591420599958536,0.318593534327405,0.449803112163605,0,1.24411862352257,0,0,0,0,0,0.727394636810238,0.107410557042488,0,0,0,0,0,0,0,0.643324774124777,0.260994291965212,0.226705925512272,0.231522474323834,0,0,0,0,1.59020231351293,0,0.168942440653073,0,1.0362910251936,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646948868380091,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591424344868181,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16241425368125,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0.356760272332706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,2.4072715192173,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.359300808426348,0,0,0,0,0,0 | ||
|short_description=p@chr1:243433014..243433053,+ | |short_description=p@chr1:243433014..243433053,+ | ||
}} | }} |
Latest revision as of 05:51, 28 July 2015
Short description: | p@chr1:243433014..243433053, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:243433014..243433053, + |
Coexpression cluster: | C430_acute_giant_chronic_CD34_CD133_melanoma_skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 1.47e-44 | 4 |
smooth muscle cell of the internal thoracic artery | 6.84e-23 | 2 |
vascular associated smooth muscle cell | 2.80e-16 | 32 |
smooth muscle cell | 5.85e-12 | 43 |
smooth muscle myoblast | 5.85e-12 | 43 |
smooth muscle cell of the subclavian artery | 9.70e-10 | 5 |
muscle cell | 3.29e-09 | 55 |
muscle precursor cell | 1.07e-08 | 58 |
myoblast | 1.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.07e-08 | 58 |
electrically responsive cell | 3.08e-08 | 61 |
electrically active cell | 3.08e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 1.47e-44 | 4 |
internal thoracic artery | 6.84e-23 | 2 |
umbilical blood vessel | 4.99e-20 | 9 |
artery | 2.94e-12 | 42 |
arterial blood vessel | 2.94e-12 | 42 |
arterial system | 2.94e-12 | 42 |
thoracic segment blood vessel | 9.70e-10 | 5 |
subclavian artery | 9.70e-10 | 5 |
epithelial tube open at both ends | 1.54e-08 | 59 |
blood vessel | 1.54e-08 | 59 |
blood vasculature | 1.54e-08 | 59 |
vascular cord | 1.54e-08 | 59 |
skeletal muscle tissue | 4.29e-08 | 62 |
striated muscle tissue | 4.29e-08 | 62 |
myotome | 4.29e-08 | 62 |
muscle tissue | 8.06e-08 | 64 |
musculature | 8.06e-08 | 64 |
musculature of body | 8.06e-08 | 64 |
vessel | 2.55e-07 | 68 |
trunk blood vessel | 3.35e-07 | 7 |
somite | 5.55e-07 | 71 |
presomitic mesoderm | 5.55e-07 | 71 |
presumptive segmental plate | 5.55e-07 | 71 |
dermomyotome | 5.55e-07 | 71 |
trunk paraxial mesoderm | 5.55e-07 | 71 |
bronchoalveolar duct junction | 6.42e-07 | 2 |
alveolar duct | 6.42e-07 | 2 |
bronchiole | 6.42e-07 | 2 |
paraxial mesoderm | 7.09e-07 | 72 |
presumptive paraxial mesoderm | 7.09e-07 | 72 |
dense mesenchyme tissue | 8.99e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 7.44e-10 | 5 |
pancreas adenocarcinoma | 5.11e-07 | 2 |
pancreatic carcinoma | 5.11e-07 | 2 |
pancreatic ductal adenocarcinoma | 5.11e-07 | 2 |
lung adenocarcinoma | 6.42e-07 | 2 |