FFCP PHASE1:Hg19::chr5:140012086..140012110,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=929 | |EntrezGene=929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1628 | |HGNC=1628 | ||
|TSSclassifier=strong | |||
|UniProt=P08571 | |UniProt=P08571 | ||
|association_with_transcript=454bp_to_AF097942_5end | |association_with_transcript=454bp_to_AF097942_5end | ||
|cluster_id=chr5:140012086..140012110,- | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_6_at_CD14_5end | |description=CAGE_peak_6_at_CD14_5end | ||
|id=chr5:140012086..140012110,- | |id=chr5:140012086..140012110,- | ||
|ontology_enrichment_celltype=CL:0002057!5.04e-56!42;CL:0000766!9.11e-54!76;CL:0000860!3.52e-51!45;CL:0002194!2.59e-50!63;CL:0000576!2.59e-50!63;CL:0000040!2.59e-50!63;CL:0000559!2.59e-50!63;CL:0002009!3.40e-48!65;CL:0000839!6.45e-47!70;CL:0000557!5.47e-46!71;CL:0000763!7.61e-30!112;CL:0000049!7.61e-30!112;CL:0000738!5.14e-27!140;CL:0002087!1.81e-24!119;CL:0002031!2.44e-21!124;CL:0000037!4.24e-18!172;CL:0000566!4.24e-18!172;CL:0002032!2.52e-16!165;CL:0000837!2.52e-16!165;CL:0000988!5.20e-16!182;CL:0002393!3.13e-11!9;CL:0002397!3.13e-11!9 | |ontology_enrichment_celltype=CL:0002057!5.04e-56!42;CL:0000766!9.11e-54!76;CL:0000860!3.52e-51!45;CL:0002194!2.59e-50!63;CL:0000576!2.59e-50!63;CL:0000040!2.59e-50!63;CL:0000559!2.59e-50!63;CL:0002009!3.40e-48!65;CL:0000839!6.45e-47!70;CL:0000557!5.47e-46!71;CL:0000763!7.61e-30!112;CL:0000049!7.61e-30!112;CL:0000738!5.14e-27!140;CL:0002087!1.81e-24!119;CL:0002031!2.44e-21!124;CL:0000037!4.24e-18!172;CL:0000566!4.24e-18!172;CL:0002032!2.52e-16!165;CL:0000837!2.52e-16!165;CL:0000988!5.20e-16!182;CL:0002393!3.13e-11!9;CL:0002397!3.13e-11!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.17e-96;33!CL:0002057;2.17e-96;33!CL:0000473;4.88e-91;39!CL:0000234;4.88e-91;39!CL:0000576;1.80e-66;48!CL:0000766;4.67e-48;69!CL:0000763;1.48e-21;100!CL:0002087;3.26e-16;104!CL:0000235;5.60e-15;6!CL:0000738;3.70e-14;136!CL:0000775;1.25e-10;3!CL:0002619;2.59e-10;3!CL:0002393;1.05e-08;6!CL:0002397;1.05e-08;6!CL:0000988;4.42e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.47e-117,48;CL:0000234,1.47e-117,48;CL:0002194,3.63e-106,59;CL:0000576,3.63e-106,59;CL:0000040,3.63e-106,59;CL:0000559,3.63e-106,59;CL:0000860,2.64e-103,42;CL:0002057,2.64e-103,42;CL:0002009,2.17e-102,61;CL:0000766,5.74e-98,72;CL:0000839,6.19e-94,66;CL:0000557,2.16e-92,67;CL:0000763,7.03e-62,108;CL:0000049,7.03e-62,108;CL:0002087,1.64e-54,115;CL:0000738,2.48e-51,136;CL:0002031,3.94e-47,120;CL:0000037,2.01e-39,168;CL:0002032,6.33e-38,161;CL:0000837,6.33e-38,161;CL:0000988,7.62e-37,177;CL:0000134,2.21e-15,354;CL:0000235,6.85e-15,6;CL:0002320,7.48e-15,361;CL:0000219,5.43e-13,386;CL:0000048,1.02e-10,427;CL:0000775,1.32e-10,3;CL:0000723,2.09e-10,433;CL:0002619,2.31e-10,3;CL:0000034,5.30e-10,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.05e-74;42!CL:0000049;1.36e-19;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.30e-47!102;UBERON:0003061!7.30e-47!102;UBERON:0002193!1.84e-43!112;UBERON:0002371!1.10e-38!80;UBERON:0001474!5.36e-36!86;UBERON:0002405!1.22e-31!115;UBERON:0004765!7.04e-28!101;UBERON:0001434!7.04e-28!101;UBERON:0003081!2.65e-21!216;UBERON:0007023!8.39e-18!115;UBERON:0002204!4.30e-16!167;UBERON:0000178!4.08e-09!15;UBERON:0000179!4.08e-09!15;UBERON:0000463!4.08e-09!15;UBERON:0000467!2.35e-07!625;UBERON:0000922!2.71e-07!612;UBERON:0000480!2.74e-07!626;UBERON:0000923!4.83e-07!604;UBERON:0005291!4.83e-07!604;UBERON:0006598!4.83e-07!604;UBERON:0002532!4.83e-07!604;UBERON:0002050!5.60e-07!605;UBERON:0005423!5.60e-07!605;UBERON:0000062!6.37e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.29e-07;15!UBERON:0000179;5.29e-07;15!UBERON:0000463;5.29e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.57e-80,76;UBERON:0002390,1.57e-78,98;UBERON:0003061,1.57e-78,98;UBERON:0001474,1.02e-73,82;UBERON:0002193,2.91e-70,108;UBERON:0004765,2.81e-66,90;UBERON:0002405,8.20e-64,93;UBERON:0001434,1.24e-58,100;UBERON:0003081,1.17e-33,203;UBERON:0002204,6.91e-31,167;UBERON:0000926,1.52e-17,315;UBERON:0004120,1.52e-17,315;UBERON:0006603,1.52e-17,315;UBERON:0002384,3.93e-14,371;UBERON:0000923,2.35e-07,560;UBERON:0010316,2.35e-07,560;UBERON:0005291,2.35e-07,560;UBERON:0006598,2.35e-07,560;UBERON:0010317,2.35e-07,560;UBERON:0002532,2.35e-07,560;UBERON:0002050,3.25e-07,564;UBERON:0000178,5.88e-07,15;UBERON:0000179,5.88e-07,15;UBERON:0000463,5.88e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0,0,0,0,0,1.10799081706375,3.81034450193269,1.95309783644267,3.58264758783879,1.94336199611388,2.06060454107349,4.65274364094607,1.88937971844405,2.42584061187816,5.81072592264212,4.93401465626191,2.16794459626573,11.507695692886,6.14785695669842,15.1348627128695,4.13694816883942,3.22742341791913,2.70852973188684,6.02375486536335,2.45615535052061,7.64059847113288,10.4068523406107,5.1348644332175,6.39337125799041,9.23583640522805,5.78444607102732,7.6720455095885,4.64334781805734,2.26954089876456,3.11411124497787,10.5524439407832,4.69334626578181,7.38442071997397,1.81619850790011,1.10483290796269,8.86094684834476,0.845021145247767,2.12604299965044,0.838634582033504,4.94245977044578,4.8056605709282,2.73233497385036,0.285012743741249,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8110993834539,2.36315962672562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.18568910348575,0.234004265139238,4.60756603095058,0,0,0,0,0,0,0,0.176096868026452,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,9.72990245129524,10.0451418286425,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49801404789436,8.97484377612075,2.07207756718018,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0.715624433709956,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.02979043692868,0.764637207142375,1.70894156152249,0.238231775457789,0.411362273086194,3.24236655596359,0.540031437238115,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.684526894459965,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0.170388021785422,0,0.879313402068495,0,0,0,0,0,0.106787412567695,0,1.24271716604159,0.992332043623902,0,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.276629009856872,0,0,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0.548257766857182,0.496211178389294,0,0,0,0.336283722218824,0,0,0.266107110487916,0,0.171488009437418,0,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0.8453114551668,0,0.0939839179798536,0.322289439867886,0,0,0,0.0802413666891683,0,1.37618785021362,0.573358332605805,0,0.271965960763659,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0.0645889098360061,0,0,0.12729431655633,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0,0,0,0,0,1.10799081706375,3.81034450193269,1.95309783644267,3.58264758783879,1.94336199611388,2.06060454107349,4.65274364094607,1.88937971844405,2.42584061187816,5.81072592264212,4.93401465626191,2.16794459626573,11.507695692886,6.14785695669842,15.1348627128695,4.13694816883942,3.22742341791913,2.70852973188684,6.02375486536335,2.45615535052061,7.64059847113288,10.4068523406107,5.1348644332175,6.39337125799041,9.23583640522805,5.78444607102732,7.6720455095885,4.64334781805734,2.26954089876456,3.11411124497787,10.5524439407832,4.69334626578181,7.38442071997397,1.81619850790011,1.10483290796269,8.86094684834476,0.845021145247767,2.12604299965044,0.838634582033504,4.94245977044578,4.8056605709282,2.73233497385036,0.285012743741249,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8110993834539,2.36315962672562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.18568910348575,0.234004265139238,4.60756603095058,0,0,0,0,0,0,0,0.176096868026452,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,9.72990245129524,10.0451418286425,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49801404789436,8.97484377612075,2.07207756718018,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0.715624433709956,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.02979043692868,0.764637207142375,1.70894156152249,0.238231775457789,0.411362273086194,3.24236655596359,0.540031437238115,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.684526894459965,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0.170388021785422,0,0.879313402068495,0,0,0,0,0,0.106787412567695,0,1.24271716604159,0.992332043623902,0,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.276629009856872,0,0,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0.548257766857182,0.496211178389294,0,0,0,0.336283722218824,0,0,0.266107110487916,0,0.171488009437418,0,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0.8453114551668,0,0.0939839179798536,0.322289439867886,0,0,0,0.0802413666891683,0,1.37618785021362,0.573358332605805,0,0.271965960763659,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0.0645889098360061,0,0,0.12729431655633,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | ||
|short_description=p6@CD14 | |short_description=p6@CD14 | ||
}} | }} |
Latest revision as of 02:24, 25 September 2015
Short description: | p6@CD14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CD14_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | 454bp_to_AF097942_5end |
EntrezGene: | CD14 |
HGNC: | 1628 |
UniProt: | P08571 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.57e-80 | 76 |
hematopoietic system | 1.57e-78 | 98 |
blood island | 1.57e-78 | 98 |
bone element | 1.02e-73 | 82 |
hemolymphoid system | 2.91e-70 | 108 |
skeletal element | 2.81e-66 | 90 |
immune system | 8.20e-64 | 93 |
skeletal system | 1.24e-58 | 100 |
lateral plate mesoderm | 1.17e-33 | 203 |
musculoskeletal system | 6.91e-31 | 167 |
mesoderm | 1.52e-17 | 315 |
mesoderm-derived structure | 1.52e-17 | 315 |
presumptive mesoderm | 1.52e-17 | 315 |
connective tissue | 3.93e-14 | 371 |
germ layer | 2.35e-07 | 560 |
germ layer / neural crest | 2.35e-07 | 560 |
embryonic tissue | 2.35e-07 | 560 |
presumptive structure | 2.35e-07 | 560 |
germ layer / neural crest derived structure | 2.35e-07 | 560 |
epiblast (generic) | 2.35e-07 | 560 |
embryonic structure | 3.25e-07 | 564 |
blood | 5.88e-07 | 15 |
haemolymphatic fluid | 5.88e-07 | 15 |
organism substance | 5.88e-07 | 15 |