FFCP PHASE1:Hg19::chr12:6898674..6898739,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6898674..6898739,+
|short_description=p1@CD4
|description=CAGE_peak_1_at_CD4_5end
|association_with_transcript=0bp_to_ENST00000437800,ENST00000535466,ENST...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=920 | |EntrezGene=920 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1678 | |HGNC=1678 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYA9,F5H480 | |UniProt=F5GYA9,F5H480 | ||
|association_with_transcript=0bp_to_ENST00000437800,ENST00000535466,ENST00000536590,ENST00000536610,ENST00000538827,ENST00000539492,ENST00000541982,ENST00000544344_5end | |||
|cluster_id=chr12:6898674..6898739,+ | |||
|coexpression_cluster_id=C2234 | |||
|description=CAGE_peak_1_at_CD4_5end | |||
|id=chr12:6898674..6898739,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.64e-43!182;CL:0000037!1.52e-42!172;CL:0000566!1.52e-42!172;CL:0000763!3.65e-40!112;CL:0000049!3.65e-40!112;CL:0002032!6.49e-39!165;CL:0000837!6.49e-39!165;CL:0000738!7.03e-39!140;CL:0000766!6.36e-37!76;CL:0000557!5.35e-35!71;CL:0000839!3.35e-33!70;CL:0002009!6.25e-33!65;CL:0002194!1.13e-31!63;CL:0000576!1.13e-31!63;CL:0000040!1.13e-31!63;CL:0000559!1.13e-31!63;CL:0002031!5.17e-31!124;CL:0002087!2.45e-29!119;CL:0002057!7.91e-27!42;CL:0000860!4.46e-23!45;CL:0000134!7.47e-09!358;CL:0002320!1.78e-08!365;CL:0000451!3.13e-07!10;CL:0002393!4.84e-07!9;CL:0002397!4.84e-07!9;CL:0000084!7.79e-07!25;CL:0000827!7.79e-07!25;CL:0000219!9.12e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.73e-22;39!CL:0000234;8.73e-22;39!CL:0000576;1.95e-21;48!CL:0000860;2.13e-21;33!CL:0002057;2.13e-21;33!CL:0000766;5.13e-19;69!CL:0000763;3.65e-14;100!CL:0000738;6.26e-10;136!CL:0002087;1.14e-09;104!CL:0000988;5.57e-09;177!CL:0000451;6.83e-08;10!CL:0000084;3.22e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.89e-50,177;CL:0000037,3.07e-49,168;CL:0000763,1.90e-48,108;CL:0000049,1.90e-48,108;CL:0000766,2.80e-45,72;CL:0002032,4.02e-45,161;CL:0000837,4.02e-45,161;CL:0000738,5.93e-45,136;CL:0000557,3.47e-43,67;CL:0002009,5.54e-41,61;CL:0000839,1.51e-40,66;CL:0002194,1.47e-39,59;CL:0000576,1.47e-39,59;CL:0000040,1.47e-39,59;CL:0000559,1.47e-39,59;CL:0002031,3.47e-36,120;CL:0000473,1.89e-34,48;CL:0000234,1.89e-34,48;CL:0002087,3.78e-34,115;CL:0000860,8.91e-30,42;CL:0002057,8.91e-30,42;CL:0000134,3.44e-09,354;CL:0002320,9.45e-09,361;CL:0000451,6.83e-08,10;CL:0002393,1.11e-07,9;CL:0002397,1.11e-07,9;CL:0000084,3.86e-07,25;CL:0000827,3.86e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-21;42!CL:0000049;2.39e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.50e-40!102;UBERON:0003061!3.50e-40!102;UBERON:0002193!4.71e-36!112;UBERON:0002371!8.19e-32!80;UBERON:0002405!2.05e-27!115;UBERON:0001474!1.76e-26!86;UBERON:0007023!3.57e-22!115;UBERON:0004765!1.42e-20!101;UBERON:0001434!1.42e-20!101;UBERON:0003081!5.32e-10!216;UBERON:0000178!4.71e-08!15;UBERON:0000179!4.71e-08!15;UBERON:0000463!4.71e-08!15;UBERON:0002204!1.63e-07!167;UBERON:0002384!1.99e-07!375;UBERON:0001049!2.49e-07!57;UBERON:0005068!2.49e-07!57;UBERON:0006241!2.49e-07!57;UBERON:0007135!2.49e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.30e-09;15!UBERON:0000179;8.30e-09;15!UBERON:0000463;8.30e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.68e-47,98;UBERON:0003061,3.68e-47,98;UBERON:0002193,3.67e-43,108;UBERON:0002371,1.70e-37,76;UBERON:0002405,6.31e-35,93;UBERON:0001474,4.69e-32,82;UBERON:0004765,1.15e-26,90;UBERON:0007023,2.88e-24,114;UBERON:0001434,2.13e-23,100;UBERON:0003081,4.74e-14,203;UBERON:0000178,8.25e-09,15;UBERON:0000179,8.25e-09,15;UBERON:0000463,8.25e-09,15;UBERON:0002204,1.08e-07,167;UBERON:0002384,1.24e-07,371;UBERON:0001049,7.44e-07,56;UBERON:0005068,7.44e-07,56;UBERON:0006241,7.44e-07,56;UBERON:0007135,7.44e-07,56 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,2.7030733015166,2.79120467188971,0.873765488520689,2.37390280405608,0,0,1.34465029290355,0,0,0,0.492484232307152,0,0.313454721478088,0.572471974262113,0,0.125542639594803,0.152826811495903,0,0,173.473646090367,111.310525448192,170.452551771,0,0,0,0,0,6.45920966536664,101.381159761334,162.641546898285,123.696196308036,335.425380411407,277.252978112246,276.636159639116,142.199477526414,143.970734545436,129.297304613106,157.354457985148,145.142264471704,132.554326743104,191.31544089423,191.864369190296,184.692621542985,142.379966144223,146.525023173529,139.489281192172,164.523804760237,155.556505532972,134.159920213716,168.958308588738,143.77620413009,138.096819172593,176.80029690008,191.684574974388,156.424483445499,185.733912722294,127.661675555506,130.792672289071,164.819124408424,172.089363078666,197.859037526361,149.533677150442,173.090488914155,143.673923898162,286.673423525305,303.598940350082,218.883625910744,279.922948817066,289.390872505583,190.138369062646,145.926524795519,208.663594381846,155.629859007468,0,1.09227722252426,0,8.10787422876364,0.800791974072025,1.72425731986345,1.98313461835459,1.90810750907073,0.569212969109448,2.34894875748376,1.14681968437569,1.32171328579026,14.0127140745384,12.6424360692037,89.5029454017941,115.938175011004,133.84657584868,174.041141701696,95.1693018570084,115.521264599275,120.792571612905,300.139770848658,109.888003488114,142.667828111852,150.025340525819,220.06088728871,185.334570272826,157.531512610322,154.479659942289,182.865747098818,158.518336020243,147.147455449342,137.986891422569,174.949625125042,125.313101407828,140.887252647878,190.017788706647,75.1814377804868,31.2520057851081,25.6622052001061,72.4266322764087,72.8243817468641,63.7146705416964,95.8947870778268,42.6986558398944,1.00803371612366,0,2.17236605824198,4.87613732627923,0,0.255725123687061,1.44575660953827,0,1.30361867064741,2.3858578411533,0.973269740605272,0.472674085820339,0.221729397462564,1.14185221401064,15.5210204464789,2.18577172975525,0,106.451545118736,104.47784237956,156.757435451742,361.313295822593,366.648737810062,261.506080936014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,23.2668158488995,0,0,0.12663051166458,0.132409180813219,0.286836620748814,2.4826786753885,0,0,0,0,0.134710672069688,0,0.605429710579726,0,0,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,1.18800285728205,2.71993622206413,10.0117749813183,7.18618141816238,0,0.125118519871964,0,3.95079858792754,7.04921930337745,5.40857012063748,0.226864366320042,0.179389635688862,0.85422955527427,0,0,0,2.57640540045629,2.04728541964749,0,0,0,0.184099797284599,0,0.355009592516614,0,0,0,0,0,0.487894824518382,0.397589304964456,1.39432731443422,0.518305275076852,0.504641701751257,0.36497735907583,1.56449532329816,3.85944562915731,0,0.464367928031979,1.44375896333917,1.18306800039844,1.34867752062481,0.482022059766964,0.55146986366197,0.871517776369625,1.42362371466658,0.674156540800822,0.98110732562673,0,7.38155454624648,1.40241773803446,5.3504621473082,10.2906097969879,2.53510069643662,9.82827216677626,27.1763357073446,24.2804704678058,0.122988438543114,0.514703430895577,0,0,0,0.370353780634118,0,0,0,0,0.117408694235822,0,0,0,0,0,297.676360359663,109.279991820024,229.486514573796,0,0,0,0.0895585227028483,0,0,98.0399843412928,72.2877643248586,61.7837784311501,62.2598198761273,91.2732793672727,3.74637576323797,5.34783795781589,10.5495702489042,5.13217338068116,9.97426679222238,13.2150945451324,2.85826432630578,6.72786506072164,14.3866822714982,4.18028229179415,0,0,0.845302752556,6.38251479803689,4.16029747645464,0.514414748524284,0,0.532844358032199,5.00422977803516,1.08524321078289,0,0,4.97548728239564,0.791951872933429,0,0,0.099972991182057,381.898671213338,288.797827573473,240.350691010656,0.239624855491583,0,0,0,0.410952645100767,0.179060963239896,0,29.1605525098852,39.6754737741512,28.1071249452649,0.254094624222463,0,0,2.01019518401218,0.637938751653163,6.74106321552464,38.8909896965232,6.21623270154053,0.858840442033979,1.50051156317903,0,0,0,0,0,0.902838299183157,0,0,1.32845119707087,0.553107505625109,0,3.52442083432933,2.05886054286514,105.24492529655,143.665657745199,101.391179913272,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0.657017248110473,0,0.348631135379878,0.120859449591622,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0,0.308061348417659,0,0,0.211103257785751,0,0,0,0,4.6060894382455,8.02703638167765,0,0.831076008928724,0.223874754722178,1.09629938322967,0.261435451024901,0,0,0,35.4461080068165,0,0,5.16838984196555,0,4.82051789532479,0,0,0.15350367472613,0.137836572484531,0,0,1.27839941124151,0,0,0,0.127612712494584,0.10115778085555,0,0.62962469366128,0,0,0,0,0,0.143124886741991,4.09374206295634,0.316379424718726,2.66882271493355,2.81487570442467,2.56763392820352,0,0,0.359744915166629,0.54907405947211,0.471249609382746,0,0,0,0.48763373908959,0.243713489631284,0,0.272999822815972,0.282810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|short_description=p1@CD4 | |||
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Latest revision as of 03:26, 20 September 2015
Short description: | p1@CD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD4_5end |
Coexpression cluster: | C2234_Monocytederived_Dendritic_CD14_Macrophage_CD4_CD14CD16_acute |
Association with transcript: | 0bp_to_ENST00000437800, ENST00000535466, ENST00000536590, ENST00000536610, ENST00000538827, ENST00000539492, ENST00000541982, ENST00000544344_5end |
EntrezGene: | CD4 |
HGNC: | 1678 |
UniProt: | F5GYA9F5H480 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.89e-50 | 177 |
hematopoietic stem cell | 3.07e-49 | 168 |
myeloid cell | 1.90e-48 | 108 |
common myeloid progenitor | 1.90e-48 | 108 |
myeloid leukocyte | 2.80e-45 | 72 |
hematopoietic oligopotent progenitor cell | 4.02e-45 | 161 |
hematopoietic multipotent progenitor cell | 4.02e-45 | 161 |
leukocyte | 5.93e-45 | 136 |
granulocyte monocyte progenitor cell | 3.47e-43 | 67 |
macrophage dendritic cell progenitor | 5.54e-41 | 61 |
myeloid lineage restricted progenitor cell | 1.51e-40 | 66 |
monopoietic cell | 1.47e-39 | 59 |
monocyte | 1.47e-39 | 59 |
monoblast | 1.47e-39 | 59 |
promonocyte | 1.47e-39 | 59 |
hematopoietic lineage restricted progenitor cell | 3.47e-36 | 120 |
defensive cell | 1.89e-34 | 48 |
phagocyte | 1.89e-34 | 48 |
nongranular leukocyte | 3.78e-34 | 115 |
classical monocyte | 8.91e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.91e-30 | 42 |
mesenchymal cell | 3.44e-09 | 354 |
connective tissue cell | 9.45e-09 | 361 |
dendritic cell | 6.83e-08 | 10 |
intermediate monocyte | 1.11e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.11e-07 | 9 |
T cell | 3.86e-07 | 25 |
pro-T cell | 3.86e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.68e-47 | 98 |
blood island | 3.68e-47 | 98 |
hemolymphoid system | 3.67e-43 | 108 |
bone marrow | 1.70e-37 | 76 |
immune system | 6.31e-35 | 93 |
bone element | 4.69e-32 | 82 |
skeletal element | 1.15e-26 | 90 |
adult organism | 2.88e-24 | 114 |
skeletal system | 2.13e-23 | 100 |
lateral plate mesoderm | 4.74e-14 | 203 |
blood | 8.25e-09 | 15 |
haemolymphatic fluid | 8.25e-09 | 15 |
organism substance | 8.25e-09 | 15 |
musculoskeletal system | 1.08e-07 | 167 |
connective tissue | 1.24e-07 | 371 |
neural tube | 7.44e-07 | 56 |
neural rod | 7.44e-07 | 56 |
future spinal cord | 7.44e-07 | 56 |
neural keel | 7.44e-07 | 56 |