FFCP PHASE1:Hg19::chr5:122110718..122110800,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6643 | |EntrezGene=6643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11173 | |HGNC=11173 | ||
|TSSclassifier=strong | |||
|UniProt=D6RC15,D6RBT1,B3KN57,O60749 | |UniProt=D6RC15,D6RBT1,B3KN57,O60749 | ||
|association_with_transcript=0bp_to_ENST00000505854,ENST00000505934,ENST00000506874,ENST00000512394,NM_003100,uc003kte.2_5end | |association_with_transcript=0bp_to_ENST00000505854,ENST00000505934,ENST00000506874,ENST00000512394,NM_003100,uc003kte.2_5end | ||
|cluster_id=chr5:122110718..122110800,+ | |||
|coexpression_cluster_id=C813 | |||
|description=CAGE_peak_1_at_SNX2_5end | |description=CAGE_peak_1_at_SNX2_5end | ||
|id=chr5:122110718..122110800,+ | |id=chr5:122110718..122110800,+ | ||
|ontology_enrichment_celltype=CL:0000839!7.02e-32!70;CL:0002194!3.51e-31!63;CL:0000576!3.51e-31!63;CL:0000040!3.51e-31!63;CL:0000559!3.51e-31!63;CL:0000557!9.14e-31!71;CL:0002009!1.34e-30!65;CL:0000766!3.05e-28!76;CL:0000763!1.05e-27!112;CL:0000049!1.05e-27!112;CL:0000037!1.89e-26!172;CL:0000566!1.89e-26!172;CL:0002031!2.16e-26!124;CL:0002087!5.50e-26!119;CL:0002032!7.13e-26!165;CL:0000837!7.13e-26!165;CL:0000738!1.48e-25!140;CL:0000860!1.34e-23!45;CL:0002057!4.49e-23!42;CL:0000988!2.46e-21!182;CL:0000134!1.28e-07!358;CL:0000236!1.43e-07!14;CL:0002320!2.13e-07!365 | |ontology_enrichment_celltype=CL:0000839!7.02e-32!70;CL:0002194!3.51e-31!63;CL:0000576!3.51e-31!63;CL:0000040!3.51e-31!63;CL:0000559!3.51e-31!63;CL:0000557!9.14e-31!71;CL:0002009!1.34e-30!65;CL:0000766!3.05e-28!76;CL:0000763!1.05e-27!112;CL:0000049!1.05e-27!112;CL:0000037!1.89e-26!172;CL:0000566!1.89e-26!172;CL:0002031!2.16e-26!124;CL:0002087!5.50e-26!119;CL:0002032!7.13e-26!165;CL:0000837!7.13e-26!165;CL:0000738!1.48e-25!140;CL:0000860!1.34e-23!45;CL:0002057!4.49e-23!42;CL:0000988!2.46e-21!182;CL:0000134!1.28e-07!358;CL:0000236!1.43e-07!14;CL:0002320!2.13e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.13e-17;39!CL:0000234;2.13e-17;39!CL:0000576;4.49e-17;48!CL:0000860;7.24e-17;33!CL:0002057;7.24e-17;33!CL:0000766;5.47e-13;69!CL:0000763;4.15e-08;100!CL:0000236;6.19e-08;13!CL:0002087;4.43e-07;104!CL:0000738;8.15e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,8.37e-32,66;CL:0002194,3.38e-31,59;CL:0000576,3.38e-31,59;CL:0000040,3.38e-31,59;CL:0000559,3.38e-31,59;CL:0000557,1.20e-30,67;CL:0002009,1.45e-30,61;CL:0000766,5.19e-28,72;CL:0000763,2.99e-27,108;CL:0000049,2.99e-27,108;CL:0000473,7.91e-27,48;CL:0000234,7.91e-27,48;CL:0002031,6.84e-26,120;CL:0000037,7.26e-26,168;CL:0002087,1.69e-25,115;CL:0002032,2.68e-25,161;CL:0000837,2.68e-25,161;CL:0000738,5.07e-25,136;CL:0000860,4.49e-23,42;CL:0002057,4.49e-23,42;CL:0000988,2.21e-21,177;CL:0000236,1.43e-07,14;CL:0000134,1.95e-07,354;CL:0002320,3.22e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.92e-17;42!CL:0000049;1.10e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.39e-27!80;UBERON:0002390!1.95e-26!102;UBERON:0003061!1.95e-26!102;UBERON:0001474!1.21e-24!86;UBERON:0002193!1.44e-22!112;UBERON:0004765!1.22e-21!101;UBERON:0001434!1.22e-21!101;UBERON:0002405!7.62e-18!115;UBERON:0007023!3.20e-07!115;UBERON:0002384!3.27e-07!375;UBERON:0002204!6.47e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.05e-26,76;UBERON:0002390,5.20e-26,98;UBERON:0003061,5.20e-26,98;UBERON:0001474,2.81e-24,82;UBERON:0004765,1.83e-22,90;UBERON:0002193,4.39e-22,108;UBERON:0001434,4.10e-21,100;UBERON:0002405,3.19e-20,93;UBERON:0007023,4.27e-07,114;UBERON:0002384,4.94e-07,371;UBERON:0002204,6.57e-07,167 | |||
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| ||
|short_description=p1@SNX2 | |short_description=p1@SNX2 | ||
}} | }} |
Latest revision as of 23:52, 19 September 2015
Short description: | p1@SNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNX2_5end |
Coexpression cluster: | C813_CD19_CD14CD16_CD14_Macrophage_Monocytederived_pancreatic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000505854, ENST00000505934, ENST00000506874, ENST00000512394, NM_003100, uc003kte.2_5end |
EntrezGene: | SNX2 |
HGNC: | 11173 |
UniProt: | D6RC15D6RBT1B3KN57O60749 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 8.37e-32 | 66 |
monopoietic cell | 3.38e-31 | 59 |
monocyte | 3.38e-31 | 59 |
monoblast | 3.38e-31 | 59 |
promonocyte | 3.38e-31 | 59 |
granulocyte monocyte progenitor cell | 1.20e-30 | 67 |
macrophage dendritic cell progenitor | 1.45e-30 | 61 |
myeloid leukocyte | 5.19e-28 | 72 |
myeloid cell | 2.99e-27 | 108 |
common myeloid progenitor | 2.99e-27 | 108 |
defensive cell | 7.91e-27 | 48 |
phagocyte | 7.91e-27 | 48 |
hematopoietic lineage restricted progenitor cell | 6.84e-26 | 120 |
hematopoietic stem cell | 7.26e-26 | 168 |
nongranular leukocyte | 1.69e-25 | 115 |
hematopoietic oligopotent progenitor cell | 2.68e-25 | 161 |
hematopoietic multipotent progenitor cell | 2.68e-25 | 161 |
leukocyte | 5.07e-25 | 136 |
classical monocyte | 4.49e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.49e-23 | 42 |
hematopoietic cell | 2.21e-21 | 177 |
B cell | 1.43e-07 | 14 |
mesenchymal cell | 1.95e-07 | 354 |
connective tissue cell | 3.22e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.05e-26 | 76 |
hematopoietic system | 5.20e-26 | 98 |
blood island | 5.20e-26 | 98 |
bone element | 2.81e-24 | 82 |
skeletal element | 1.83e-22 | 90 |
hemolymphoid system | 4.39e-22 | 108 |
skeletal system | 4.10e-21 | 100 |
immune system | 3.19e-20 | 93 |
adult organism | 4.27e-07 | 114 |
connective tissue | 4.94e-07 | 371 |
musculoskeletal system | 6.57e-07 | 167 |