FFCP PHASE1:Hg19::chr1:209605887..209605890,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:209605887..209605890,- | |||
|coexpression_cluster_id=C2560 | |||
|description=CAGE_peak_at_chr1:209605887..209605890,- | |description=CAGE_peak_at_chr1:209605887..209605890,- | ||
|id=chr1:209605887..209605890,- | |id=chr1:209605887..209605890,- | ||
|ontology_enrichment_celltype=CL:0002076!1.16e-28!43;CL:0000223!1.32e-19!59;CL:0002368!7.85e-19!13;CL:0000066!6.22e-16!254;CL:0002251!1.28e-13!21;CL:0002328!2.97e-13!3;CL:0002621!5.23e-13!3;CL:0000575!8.35e-09!2;CL:0002202!2.43e-07!9;CL:0002632!2.43e-07!9;CL:0002159!3.05e-07!13;CL:0000082!3.61e-07!19;CL:0000220!3.63e-07!246;CL:0002321!4.68e-07!248 | |ontology_enrichment_celltype=CL:0002076!1.16e-28!43;CL:0000223!1.32e-19!59;CL:0002368!7.85e-19!13;CL:0000066!6.22e-16!254;CL:0002251!1.28e-13!21;CL:0002328!2.97e-13!3;CL:0002621!5.23e-13!3;CL:0000575!8.35e-09!2;CL:0002202!2.43e-07!9;CL:0002632!2.43e-07!9;CL:0002159!3.05e-07!13;CL:0000082!3.61e-07!19;CL:0000220!3.63e-07!246;CL:0002321!4.68e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002328;1.19e-09;3!CL:0002621;1.60e-09;3!CL:0002368;1.17e-08;13!CL:0000244;1.86e-07;4!CL:0000731;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,1.19e-09,3;CL:0002621,1.41e-09,3;CL:0002368,1.13e-08,13;CL:0000244,1.80e-07,4;CL:0000731,1.80e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!6.08e-17!14 | |ontology_enrichment_disease=DOID:1749!6.08e-17!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!4.08e-17!72;UBERON:0004815!2.97e-13!3;UBERON:0002031!2.97e-13!3;UBERON:0001949!5.23e-13!3;UBERON:0003729!1.47e-12!5;UBERON:0004119!2.19e-12!169;UBERON:0000925!2.19e-12!169;UBERON:0006595!2.19e-12!169;UBERON:0000161!4.00e-11!35;UBERON:0005153!1.38e-10!37;UBERON:0004807!3.15e-10!28;UBERON:0005157!4.11e-10!51;UBERON:0002185!4.81e-10!4;UBERON:0005911!6.61e-10!82;UBERON:0000065!9.01e-10!53;UBERON:0003343!1.87e-09!4;UBERON:0004785!1.87e-09!4;UBERON:0000166!2.20e-08!21;UBERON:0002048!4.90e-08!22;UBERON:0000117!4.90e-08!22;UBERON:0000171!4.90e-08!22;UBERON:0000170!4.90e-08!22;UBERON:0005597!4.90e-08!22;UBERON:0000118!4.90e-08!22;UBERON:0000365!8.75e-08!5;UBERON:0005178!9.60e-08!34;UBERON:0002224!9.60e-08!34;UBERON:0000165!9.81e-08!28;UBERON:0000930!9.81e-08!28;UBERON:0000344!1.04e-07!12;UBERON:0001007!1.30e-07!155;UBERON:0001555!1.30e-07!155;UBERON:0007026!1.30e-07!155;UBERON:0005181!1.77e-07!35;UBERON:0004802!3.61e-07!19;UBERON:0000115!3.61e-07!19;UBERON:0007196!8.28e-07!14;UBERON:0001558!8.28e-07!14;UBERON:0008947!9.14e-07!38;UBERON:0003258!9.14e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.19e-09;3!UBERON:0002031;1.19e-09;3!UBERON:0001949;1.60e-09;3!UBERON:0000486;3.55e-09;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.19e-09,3;UBERON:0002031,1.19e-09,3;UBERON:0001949,1.41e-09,3 | |||
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| ||
|short_description=p@chr1:209605887..209605890,- | |short_description=p@chr1:209605887..209605890,- | ||
}} | }} |
Latest revision as of 03:18, 28 July 2015
Short description: | p@chr1:209605887..209605890, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209605887..209605890, - |
Coexpression cluster: | C2560_nasal_squamous_Small_cervical_Prostate_Tracheal_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 1.19e-09 | 3 |
gingival epithelial cell | 1.41e-09 | 3 |
respiratory epithelial cell | 1.13e-08 | 13 |
transitional epithelial cell | 1.80e-07 | 4 |
urothelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.19e-09 | 3 |
epithelium of bronchus | 1.19e-09 | 3 |
gingival epithelium | 1.41e-09 | 3 |