FFCP PHASE1:Hg19::chr12:56351139..56351147,-: Difference between revisions
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|id=chr12:56351139..56351147,-
|short_description=p19@PMEL
|description=CAGE_peak_19_at_PMEL_5end
|association_with_transcript=-13bp_to_ENST00000549564_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000549564_5end | |||
|cluster_id=chr12:56351139..56351147,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_19_at_PMEL_5end | |||
|id=chr12:56351139..56351147,- | |||
|ontology_enrichment_celltype=CL:0000148!2.33e-106!10;CL:0000541!2.33e-106!10;CL:0000147!2.06e-93!14;CL:0000710!7.12e-53!20;CL:0002077!4.21e-39!33;CL:0000075!5.56e-39!27;CL:0000325!5.47e-33!39;CL:0002322!3.39e-24!5;CL:0000333!3.50e-24!41;CL:0000221!9.56e-21!71;CL:0000133!1.07e-20!59;CL:0002567!6.63e-19!3;CL:0002566!9.36e-15!1;CL:0000149!2.11e-14!4 | |||
|ontology_enrichment_celltype_v019=CL:0000148;5.03e-82;10!CL:0000147;7.71e-59;14!CL:0000710;1.99e-41;20!CL:0002566;8.34e-34;1!CL:0000075;7.09e-31;27!CL:0002077;2.85e-22;34!CL:0002567;2.07e-12;3!CL:0000149;1.12e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.03e-82,10;CL:0000541,5.03e-82,10;CL:0000147,7.71e-59,14;CL:0000710,1.99e-41,20;CL:0002566,9.85e-34,1;CL:0000075,7.10e-31,27;CL:0002077,1.18e-24,34;CL:0000333,1.27e-19,41;CL:0000133,5.41e-14,59;CL:0002567,2.07e-12,3;CL:0000221,1.28e-11,72;CL:0000149,1.12e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000221;3.72e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!9.31e-28!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;9.07e-18;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,9.07e-18,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.17e-11!5;UBERON:0005388!2.17e-11!5;UBERON:0001802!2.17e-11!5 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p19@PMEL | |||
}} | }} |
Latest revision as of 09:06, 19 September 2015
Short description: | p19@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -13bp_to_ENST00000549564_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.03e-82 | 10 |
melanoblast | 5.03e-82 | 10 |
pigment cell | 7.71e-59 | 14 |
neurecto-epithelial cell | 1.99e-41 | 20 |
dark melanocyte | 9.85e-34 | 1 |
columnar/cuboidal epithelial cell | 7.10e-31 | 27 |
ecto-epithelial cell | 1.18e-24 | 34 |
migratory neural crest cell | 1.27e-19 | 41 |
neurectodermal cell | 5.41e-14 | 59 |
light melanocyte | 2.07e-12 | 3 |
ectodermal cell | 1.28e-11 | 72 |
visual pigment cell | 1.12e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.07e-18 | 2 |