FFCP PHASE1:Hg19::chr4:2794804..2794822,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6452 | |EntrezGene=6452 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10825 | |HGNC=10825 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000512131_5end | |association_with_transcript=5bp_to_ENST00000512131_5end | ||
|cluster_id=chr4:2794804..2794822,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_SH3BP2_5end | |description=CAGE_peak_1_at_SH3BP2_5end | ||
|id=chr4:2794804..2794822,+ | |id=chr4:2794804..2794822,+ | ||
|ontology_enrichment_celltype=CL:0000766!6.48e-37!76;CL:0000557!4.52e-33!71;CL:0002009!4.90e-31!65;CL:0002194!5.66e-30!63;CL:0000576!5.66e-30!63;CL:0000040!5.66e-30!63;CL:0000559!5.66e-30!63;CL:0000839!1.25e-29!70;CL:0002057!6.90e-28!42;CL:0000860!7.42e-27!45;CL:0000763!3.46e-20!112;CL:0000049!3.46e-20!112;CL:0000738!1.49e-12!140;CL:0002031!2.40e-09!124;CL:0002087!7.33e-09!119;CL:0000988!2.16e-07!182;CL:0002032!5.12e-07!165;CL:0000837!5.12e-07!165;CL:0000037!6.80e-07!172;CL:0000566!6.80e-07!172;CL:0002393!9.16e-07!9;CL:0002397!9.16e-07!9 | |ontology_enrichment_celltype=CL:0000766!6.48e-37!76;CL:0000557!4.52e-33!71;CL:0002009!4.90e-31!65;CL:0002194!5.66e-30!63;CL:0000576!5.66e-30!63;CL:0000040!5.66e-30!63;CL:0000559!5.66e-30!63;CL:0000839!1.25e-29!70;CL:0002057!6.90e-28!42;CL:0000860!7.42e-27!45;CL:0000763!3.46e-20!112;CL:0000049!3.46e-20!112;CL:0000738!1.49e-12!140;CL:0002031!2.40e-09!124;CL:0002087!7.33e-09!119;CL:0000988!2.16e-07!182;CL:0002032!5.12e-07!165;CL:0000837!5.12e-07!165;CL:0000037!6.80e-07!172;CL:0000566!6.80e-07!172;CL:0002393!9.16e-07!9;CL:0002397!9.16e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.33e-21;33!CL:0002057;5.33e-21;33!CL:0000473;2.09e-20;39!CL:0000234;2.09e-20;39!CL:0000576;1.02e-18;48!CL:0000766;6.64e-17;69!CL:0000763;8.44e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.18e-39,72;CL:0000557,7.39e-35,67;CL:0002009,7.60e-33,61;CL:0002194,9.13e-32,59;CL:0000576,9.13e-32,59;CL:0000040,9.13e-32,59;CL:0000559,9.13e-32,59;CL:0000473,1.43e-31,48;CL:0000234,1.43e-31,48;CL:0000839,3.60e-31,66;CL:0000860,2.83e-28,42;CL:0002057,2.83e-28,42;CL:0000763,3.14e-21,108;CL:0000049,3.14e-21,108;CL:0000738,2.18e-13,136;CL:0002031,5.97e-10,120;CL:0002087,1.79e-09,115;CL:0000988,3.03e-08,177;CL:0002032,1.28e-07,161;CL:0000837,1.28e-07,161;CL:0000037,1.57e-07,168;CL:0002393,7.67e-07,9;CL:0002397,7.67e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.88e-34!102;UBERON:0003061!6.88e-34!102;UBERON:0002193!1.32e-31!112;UBERON:0002371!2.18e-30!80;UBERON:0001474!1.56e-28!86;UBERON:0002405!9.78e-28!115;UBERON:0004765!7.27e-20!101;UBERON:0001434!7.27e-20!101;UBERON:0007023!2.21e-15!115;UBERON:0000062!1.18e-11!511;UBERON:0003081!1.79e-11!216;UBERON:0000467!2.33e-10!625;UBERON:0000480!3.71e-10!626;UBERON:0000468!2.35e-09!659;UBERON:0002050!1.99e-08!605;UBERON:0005423!1.99e-08!605;UBERON:0000923!3.08e-08!604;UBERON:0005291!3.08e-08!604;UBERON:0006598!3.08e-08!604;UBERON:0002532!3.08e-08!604;UBERON:0000922!5.26e-08!612;UBERON:0000479!1.04e-07!787;UBERON:0002204!3.82e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.47e-35,98;UBERON:0003061,3.47e-35,98;UBERON:0002193,4.02e-32,108;UBERON:0002371,8.00e-32,76;UBERON:0001474,6.19e-30,82;UBERON:0004765,1.57e-27,90;UBERON:0002405,1.99e-26,93;UBERON:0001434,2.53e-21,100;UBERON:0007023,2.35e-15,114;UBERON:0003081,1.57e-11,203;UBERON:0002204,3.07e-08,167;UBERON:0000479,7.45e-08,773;UBERON:0000923,8.99e-08,560;UBERON:0010316,8.99e-08,560;UBERON:0005291,8.99e-08,560;UBERON:0006598,8.99e-08,560;UBERON:0010317,8.99e-08,560;UBERON:0002532,8.99e-08,560;UBERON:0005423,1.71e-07,581;UBERON:0002050,2.47e-07,564;UBERON:0000922,2.65e-07,592 | |||
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| ||
|short_description=p1@SH3BP2 | |short_description=p1@SH3BP2 | ||
}} | }} |
Latest revision as of 12:15, 17 September 2015
Short description: | p1@SH3BP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH3BP2_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 5bp_to_ENST00000512131_5end |
EntrezGene: | SH3BP2 |
HGNC: | 10825 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.18e-39 | 72 |
granulocyte monocyte progenitor cell | 7.39e-35 | 67 |
macrophage dendritic cell progenitor | 7.60e-33 | 61 |
monopoietic cell | 9.13e-32 | 59 |
monocyte | 9.13e-32 | 59 |
monoblast | 9.13e-32 | 59 |
promonocyte | 9.13e-32 | 59 |
defensive cell | 1.43e-31 | 48 |
phagocyte | 1.43e-31 | 48 |
myeloid lineage restricted progenitor cell | 3.60e-31 | 66 |
classical monocyte | 2.83e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.83e-28 | 42 |
myeloid cell | 3.14e-21 | 108 |
common myeloid progenitor | 3.14e-21 | 108 |
leukocyte | 2.18e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 5.97e-10 | 120 |
nongranular leukocyte | 1.79e-09 | 115 |
hematopoietic cell | 3.03e-08 | 177 |
hematopoietic oligopotent progenitor cell | 1.28e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.28e-07 | 161 |
hematopoietic stem cell | 1.57e-07 | 168 |
intermediate monocyte | 7.67e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.67e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.47e-35 | 98 |
blood island | 3.47e-35 | 98 |
hemolymphoid system | 4.02e-32 | 108 |
bone marrow | 8.00e-32 | 76 |
bone element | 6.19e-30 | 82 |
skeletal element | 1.57e-27 | 90 |
immune system | 1.99e-26 | 93 |
skeletal system | 2.53e-21 | 100 |
adult organism | 2.35e-15 | 114 |
lateral plate mesoderm | 1.57e-11 | 203 |
musculoskeletal system | 3.07e-08 | 167 |
tissue | 7.45e-08 | 773 |
germ layer | 8.99e-08 | 560 |
germ layer / neural crest | 8.99e-08 | 560 |
embryonic tissue | 8.99e-08 | 560 |
presumptive structure | 8.99e-08 | 560 |
germ layer / neural crest derived structure | 8.99e-08 | 560 |
epiblast (generic) | 8.99e-08 | 560 |
developing anatomical structure | 1.71e-07 | 581 |
embryonic structure | 2.47e-07 | 564 |
embryo | 2.65e-07 | 592 |