FFCP PHASE1:Hg19::chr1:173446439..173446458,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9588 | |EntrezGene=9588 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16753 | |HGNC=16753 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000460950_5end | |association_with_transcript=-10bp_to_ENST00000460950_5end | ||
|cluster_id=chr1:173446439..173446458,+ | |||
|description=CAGE_peak_3_at_PRDX6_5end | |description=CAGE_peak_3_at_PRDX6_5end | ||
|id=chr1:173446439..173446458,+ | |id=chr1:173446439..173446458,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.37e-10!180;CL:0000680!3.65e-08!57;CL:0000056!3.65e-08!57;CL:0000355!3.65e-08!57;CL:0000187!7.82e-08!54;CL:0000393!9.11e-08!60;CL:0000211!9.11e-08!60;CL:0000183!9.27e-08!59;CL:0000136!4.77e-07!15 | |ontology_enrichment_celltype=CL:0000055!6.37e-10!180;CL:0000680!3.65e-08!57;CL:0000056!3.65e-08!57;CL:0000355!3.65e-08!57;CL:0000187!7.82e-08!54;CL:0000393!9.11e-08!60;CL:0000211!9.11e-08!60;CL:0000183!9.27e-08!59;CL:0000136!4.77e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000136;9.91e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.51e-08,58;CL:0000056,1.51e-08,58;CL:0000355,1.51e-08,58;CL:0000187,3.24e-08,55;CL:0000393,3.89e-08,61;CL:0000211,3.89e-08,61;CL:0000136,4.77e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.02e-12!238;UBERON:0009142!1.02e-12!238;UBERON:0000926!1.18e-11!448;UBERON:0004120!1.18e-11!448;UBERON:0006603!1.18e-11!448;UBERON:0004290!2.06e-11!70;UBERON:0002100!5.81e-11!216;UBERON:0000914!2.32e-10!83;UBERON:0002329!2.32e-10!83;UBERON:0003077!2.32e-10!83;UBERON:0003059!2.32e-10!83;UBERON:0007282!2.32e-10!83;UBERON:0009618!2.32e-10!83;UBERON:0007285!2.32e-10!83;UBERON:0000486!5.48e-10!82;UBERON:0001134!1.66e-09!61;UBERON:0002036!1.66e-09!61;UBERON:0003082!1.66e-09!61;UBERON:0005256!2.38e-09!143;UBERON:0002385!5.13e-09!63;UBERON:0001015!5.13e-09!63;UBERON:0000383!5.13e-09!63;UBERON:0001737!2.05e-07!9;UBERON:0008947!7.56e-07!38;UBERON:0003258!7.56e-07!38;UBERON:0001048!7.79e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.02e-07;9!UBERON:0001557;2.02e-07;9!UBERON:0000072;7.36e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,7.94e-12,71;UBERON:0003059,7.94e-12,71;UBERON:0007282,7.94e-12,71;UBERON:0004290,7.94e-12,71;UBERON:0009618,7.94e-12,71;UBERON:0002100,1.42e-11,199;UBERON:0007524,2.10e-11,73;UBERON:0003077,3.09e-11,72;UBERON:0007285,3.09e-11,72;UBERON:0007503,1.20e-10,78;UBERON:0003104,1.38e-10,160;UBERON:0009142,1.38e-10,160;UBERON:0000486,2.31e-10,83;UBERON:0001134,6.63e-10,62;UBERON:0002036,6.63e-10,62;UBERON:0003082,6.63e-10,62;UBERON:0002385,2.10e-09,64;UBERON:0001015,2.10e-09,64;UBERON:0000383,2.10e-09,64;UBERON:0005256,2.31e-09,122;UBERON:0001048,1.98e-07,160;UBERON:0001737,2.05e-07,9;UBERON:0000490,5.81e-07,148;UBERON:0008947,7.56e-07,38;UBERON:0003258,7.56e-07,38 | |||
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| ||
|short_description=p3@PRDX6 | |short_description=p3@PRDX6 | ||
}} | }} |
Latest revision as of 17:38, 18 September 2015
Short description: | p3@PRDX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRDX6_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000460950_5end |
EntrezGene: | PRDX6 |
HGNC: | 16753 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.51e-08 | 58 |
myoblast | 1.51e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.51e-08 | 58 |
muscle cell | 3.24e-08 | 55 |
electrically responsive cell | 3.89e-08 | 61 |
electrically active cell | 3.89e-08 | 61 |
fat cell | 4.77e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
somite | 7.94e-12 | 71 |
presomitic mesoderm | 7.94e-12 | 71 |
presumptive segmental plate | 7.94e-12 | 71 |
dermomyotome | 7.94e-12 | 71 |
trunk paraxial mesoderm | 7.94e-12 | 71 |
trunk | 1.42e-11 | 199 |
dense mesenchyme tissue | 2.10e-11 | 73 |
paraxial mesoderm | 3.09e-11 | 72 |
presumptive paraxial mesoderm | 3.09e-11 | 72 |
epithelial vesicle | 1.20e-10 | 78 |
mesenchyme | 1.38e-10 | 160 |
entire embryonic mesenchyme | 1.38e-10 | 160 |
multilaminar epithelium | 2.31e-10 | 83 |
skeletal muscle tissue | 6.63e-10 | 62 |
striated muscle tissue | 6.63e-10 | 62 |
myotome | 6.63e-10 | 62 |
muscle tissue | 2.10e-09 | 64 |
musculature | 2.10e-09 | 64 |
musculature of body | 2.10e-09 | 64 |
trunk mesenchyme | 2.31e-09 | 122 |
primordium | 1.98e-07 | 160 |
larynx | 2.05e-07 | 9 |
unilaminar epithelium | 5.81e-07 | 148 |
respiratory primordium | 7.56e-07 | 38 |
endoderm of foregut | 7.56e-07 | 38 |