FFCP PHASE1:Hg19::chr1:163045680..163045693,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5999 | |EntrezGene=5999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10000 | |HGNC=10000 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-372bp_to_AL137433_5end | |association_with_transcript=-372bp_to_AL137433_5end | ||
|cluster_id=chr1:163045680..163045693,+ | |||
|description=CAGE_peak_4_at_RGS4_5end | |description=CAGE_peak_4_at_RGS4_5end | ||
|id=chr1:163045680..163045693,+ | |id=chr1:163045680..163045693,+ | ||
|ontology_enrichment_celltype=CL:0000359!3.12e-15!32;CL:0000192!2.26e-11!42;CL:0000514!2.26e-11!42;CL:0000055!2.57e-10!180;CL:0000680!2.34e-09!57;CL:0000056!2.34e-09!57;CL:0000355!2.34e-09!57;CL:0000187!2.66e-08!54;CL:0000183!7.42e-08!59;CL:0000057!1.61e-07!75;CL:0002594!4.77e-07!4;CL:0000569!6.50e-07!4;CL:0000011!6.50e-07!4;CL:0000393!6.77e-07!60;CL:0000211!6.77e-07!60 | |ontology_enrichment_celltype=CL:0000359!3.12e-15!32;CL:0000192!2.26e-11!42;CL:0000514!2.26e-11!42;CL:0000055!2.57e-10!180;CL:0000680!2.34e-09!57;CL:0000056!2.34e-09!57;CL:0000355!2.34e-09!57;CL:0000187!2.66e-08!54;CL:0000183!7.42e-08!59;CL:0000057!1.61e-07!75;CL:0002594!4.77e-07!4;CL:0000569!6.50e-07!4;CL:0000011!6.50e-07!4;CL:0000393!6.77e-07!60;CL:0000211!6.77e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.82e-13;32!CL:0002539;1.22e-11;10!CL:0002594;5.42e-08;4!CL:0000192;8.64e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.94e-13,32;CL:0002539,1.17e-11,10;CL:0000192,2.02e-09,43;CL:0000514,2.02e-09,43;CL:0002594,6.25e-08,4;CL:0000187,3.95e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;8.64e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!1.22e-12!14;DOID:193!7.84e-07!29 | |ontology_enrichment_disease=DOID:2394!1.22e-12!14;DOID:193!7.84e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:0060084;5.31e-11;3!DOID:127;5.31e-11;3!DOID:2394;1.23e-08;14!DOID:0060072;1.84e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,5.59e-11,3;DOID:127,5.59e-11,3;DOID:2394,1.20e-08,14;DOID:0060072,1.91e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001637!2.39e-17!42;UBERON:0003509!2.39e-17!42;UBERON:0004572!2.39e-17!42;UBERON:0004872!2.69e-12!84;UBERON:0001981!5.60e-12!60;UBERON:0007500!5.60e-12!60;UBERON:0004537!5.60e-12!60;UBERON:0006965!5.60e-12!60;UBERON:0004573!1.47e-11!33;UBERON:0004571!1.47e-11!33;UBERON:0002049!2.62e-11!79;UBERON:0007798!2.62e-11!79;UBERON:0002619!1.32e-10!22;UBERON:0004535!1.35e-10!110;UBERON:0001950!1.77e-10!20;UBERON:0000055!2.58e-10!69;UBERON:0001009!4.94e-10!113;UBERON:0000956!6.21e-09!25;UBERON:0000203!6.21e-09!25;UBERON:0000025!6.41e-09!194;UBERON:0001134!2.57e-08!61;UBERON:0002036!2.57e-08!61;UBERON:0003082!2.57e-08!61;UBERON:0002118!3.01e-08!5;UBERON:0004532!3.01e-08!5;UBERON:0001869!3.20e-08!32;UBERON:0002385!7.51e-08!63;UBERON:0001015!7.51e-08!63;UBERON:0000383!7.51e-08!63;UBERON:0003914!8.69e-08!118;UBERON:0001893!1.64e-07!34;UBERON:0000914!1.64e-07!83;UBERON:0002329!1.64e-07!83;UBERON:0003077!1.64e-07!83;UBERON:0003059!1.64e-07!83;UBERON:0007282!1.64e-07!83;UBERON:0009618!1.64e-07!83;UBERON:0007285!1.64e-07!83;UBERON:0000947!2.91e-07!21;UBERON:0010191!2.91e-07!21;UBERON:0004290!4.27e-07!70;UBERON:0001310!4.77e-07!4;UBERON:0000992!4.85e-07!13;UBERON:0002791!7.78e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000947;8.31e-12;21!UBERON:0010191;8.31e-12;21!UBERON:0004237;1.22e-11;10!UBERON:0004695;1.22e-11;10!UBERON:0002111;1.22e-11;10!UBERON:0004178;1.22e-11;10!UBERON:0004573;1.34e-11;33!UBERON:0004571;1.34e-11;33!UBERON:0001637;1.56e-08;42!UBERON:0003509;1.56e-08;42!UBERON:0004572;1.56e-08;42!UBERON:0002119;3.60e-08;4!UBERON:0001310;5.42e-08;4!UBERON:0001135;8.36e-08;15!UBERON:0003134;3.99e-07;33!UBERON:0007500;4.92e-07;56!UBERON:0001981;4.92e-07;56!UBERON:0004537;4.92e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.94e-15,42;UBERON:0003509,2.94e-15,42;UBERON:0004572,2.94e-15,42;UBERON:0004573,9.09e-13,33;UBERON:0004571,9.09e-13,33;UBERON:0000947,6.98e-12,21;UBERON:0010191,6.98e-12,21;UBERON:0004237,1.17e-11,10;UBERON:0004695,1.17e-11,10;UBERON:0002111,1.17e-11,10;UBERON:0004178,1.17e-11,10;UBERON:0007500,2.18e-10,59;UBERON:0001981,2.18e-10,59;UBERON:0004537,2.18e-10,59;UBERON:0006965,2.18e-10,59;UBERON:0004872,4.11e-10,83;UBERON:0000055,8.49e-09,68;UBERON:0002119,3.54e-08,4;UBERON:0001310,6.25e-08,4;UBERON:0001135,8.15e-08,15;UBERON:0002049,1.84e-07,78;UBERON:0007798,1.84e-07,78;UBERON:0004535,3.38e-07,109;UBERON:0001009,5.99e-07,112 | |||
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| ||
|short_description=p4@RGS4 | |short_description=p4@RGS4 | ||
}} | }} |
Latest revision as of 07:59, 18 September 2015
Short description: | p4@RGS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGS4_5end |
Coexpression cluster: | NA |
Association with transcript: | -372bp_to_AL137433_5end |
EntrezGene: | RGS4 |
HGNC: | 10000 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.94e-13 | 32 |
aortic smooth muscle cell | 1.17e-11 | 10 |
smooth muscle cell | 2.02e-09 | 43 |
smooth muscle myoblast | 2.02e-09 | 43 |
smooth muscle cell of the umbilical artery | 6.25e-08 | 4 |
muscle cell | 3.95e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
artery | 2.94e-15 | 42 |
arterial blood vessel | 2.94e-15 | 42 |
arterial system | 2.94e-15 | 42 |
systemic artery | 9.09e-13 | 33 |
systemic arterial system | 9.09e-13 | 33 |
aorta | 6.98e-12 | 21 |
aortic system | 6.98e-12 | 21 |
blood vessel smooth muscle | 1.17e-11 | 10 |
arterial system smooth muscle | 1.17e-11 | 10 |
artery smooth muscle tissue | 1.17e-11 | 10 |
aorta smooth muscle tissue | 1.17e-11 | 10 |
epithelial tube open at both ends | 2.18e-10 | 59 |
blood vessel | 2.18e-10 | 59 |
blood vasculature | 2.18e-10 | 59 |
vascular cord | 2.18e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 4.11e-10 | 83 |
vessel | 8.49e-09 | 68 |
left ovary | 3.54e-08 | 4 |
umbilical artery | 6.25e-08 | 4 |
smooth muscle tissue | 8.15e-08 | 15 |
vasculature | 1.84e-07 | 78 |
vascular system | 1.84e-07 | 78 |
cardiovascular system | 3.38e-07 | 109 |
circulatory system | 5.99e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 5.59e-11 | 3 |
leiomyoma | 5.59e-11 | 3 |
ovarian cancer | 1.20e-08 | 14 |
benign neoplasm | 1.91e-08 | 4 |