FFCP PHASE1:Hg19::chr12:53773944..53773993,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:53773944..53773993,+
|short_description=p1@SP1
|description=CAGE_peak_1_at_SP1_5end
|association_with_transcript=0bp_to_ENST00000327443,ENST00000551969,NM...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6667 | |EntrezGene=6667 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11205 | |HGNC=11205 | ||
|TSSclassifier=strong | |||
|UniProt=P08047,E4Z9M7 | |UniProt=P08047,E4Z9M7 | ||
|association_with_transcript=0bp_to_ENST00000327443,ENST00000551969,NM_001251825,NM_138473,uc001scw.2_5end | |||
|cluster_id=chr12:53773944..53773993,+ | |||
|description=CAGE_peak_1_at_SP1_5end | |||
|id=chr12:53773944..53773993,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.10e-33!172;CL:0000566!4.10e-33!172;CL:0002032!1.15e-31!165;CL:0000837!1.15e-31!165;CL:0000738!1.36e-31!140;CL:0000988!1.64e-28!182;CL:0002031!1.02e-26!124;CL:0002087!9.91e-25!119;CL:0000763!6.78e-18!112;CL:0000049!6.78e-18!112;CL:0000766!3.76e-16!76;CL:0000839!2.19e-13!70;CL:0000557!3.29e-13!71;CL:0000542!4.00e-13!53;CL:0000051!4.00e-13!53;CL:0000838!4.57e-13!52;CL:0000860!5.36e-13!45;CL:0002057!1.54e-11!42;CL:0002009!4.99e-11!65;CL:0002194!1.17e-10!63;CL:0000576!1.17e-10!63;CL:0000040!1.17e-10!63;CL:0000559!1.17e-10!63;CL:0000945!4.11e-07!24;CL:0000826!4.11e-07!24;CL:0000236!5.03e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.91e-09;33!CL:0002057;3.91e-09;33!CL:0000542;3.40e-08;53!CL:0000576;3.44e-08;48!CL:0000738;8.31e-08;136!CL:0002087;8.56e-08;104!CL:0000236;1.83e-07;13!CL:0000766;3.02e-07;69!CL:0000945;4.30e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.15e-31,168;CL:0002032,3.07e-30,161;CL:0000837,3.07e-30,161;CL:0000738,3.64e-30,136;CL:0000988,9.82e-28,177;CL:0002031,2.36e-25,120;CL:0002087,2.16e-23,115;CL:0000763,1.12e-16,108;CL:0000049,1.12e-16,108;CL:0000766,6.51e-15,72;CL:0000542,4.00e-13,53;CL:0000051,4.00e-13,53;CL:0000838,4.57e-13,52;CL:0000839,3.39e-12,66;CL:0000557,5.01e-12,67;CL:0000860,1.54e-11,42;CL:0002057,1.54e-11,42;CL:0002009,6.83e-10,61;CL:0002194,1.57e-09,59;CL:0000576,1.57e-09,59;CL:0000040,1.57e-09,59;CL:0000559,1.57e-09,59;CL:0000473,1.65e-09,48;CL:0000234,1.65e-09,48;CL:0000945,4.11e-07,24;CL:0000826,4.11e-07,24;CL:0000236,5.03e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.05e-08;42!CL:0000051;3.40e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.46e-17!102;UBERON:0003061!8.46e-17!102;UBERON:0002193!7.10e-15!112;UBERON:0002371!1.07e-10!80;UBERON:0001474!5.74e-10!86;UBERON:0002405!3.58e-08!115;UBERON:0004765!7.25e-08!101;UBERON:0001434!7.25e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-15,98;UBERON:0003061,1.37e-15,98;UBERON:0002193,1.01e-13,108;UBERON:0002405,3.33e-10,93;UBERON:0002371,1.28e-09,76;UBERON:0001474,6.20e-09,82;UBERON:0004765,2.25e-07,90;UBERON:0001434,5.13e-07,100 | |||
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| ||
|short_description=p1@SP1 | |||
}} | }} |
Latest revision as of 02:52, 19 September 2015
Short description: | p1@SP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327443, ENST00000551969, NM_001251825, NM_138473, uc001scw.2_5end |
EntrezGene: | SP1 |
HGNC: | 11205 |
UniProt: | P08047E4Z9M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.15e-31 | 168 |
hematopoietic oligopotent progenitor cell | 3.07e-30 | 161 |
hematopoietic multipotent progenitor cell | 3.07e-30 | 161 |
leukocyte | 3.64e-30 | 136 |
hematopoietic cell | 9.82e-28 | 177 |
hematopoietic lineage restricted progenitor cell | 2.36e-25 | 120 |
nongranular leukocyte | 2.16e-23 | 115 |
myeloid cell | 1.12e-16 | 108 |
common myeloid progenitor | 1.12e-16 | 108 |
myeloid leukocyte | 6.51e-15 | 72 |
lymphocyte | 4.00e-13 | 53 |
common lymphoid progenitor | 4.00e-13 | 53 |
lymphoid lineage restricted progenitor cell | 4.57e-13 | 52 |
myeloid lineage restricted progenitor cell | 3.39e-12 | 66 |
granulocyte monocyte progenitor cell | 5.01e-12 | 67 |
classical monocyte | 1.54e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.54e-11 | 42 |
macrophage dendritic cell progenitor | 6.83e-10 | 61 |
monopoietic cell | 1.57e-09 | 59 |
monocyte | 1.57e-09 | 59 |
monoblast | 1.57e-09 | 59 |
promonocyte | 1.57e-09 | 59 |
defensive cell | 1.65e-09 | 48 |
phagocyte | 1.65e-09 | 48 |
lymphocyte of B lineage | 4.11e-07 | 24 |
pro-B cell | 4.11e-07 | 24 |
B cell | 5.03e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-15 | 98 |
blood island | 1.37e-15 | 98 |
hemolymphoid system | 1.01e-13 | 108 |
immune system | 3.33e-10 | 93 |
bone marrow | 1.28e-09 | 76 |
bone element | 6.20e-09 | 82 |
skeletal element | 2.25e-07 | 90 |
skeletal system | 5.13e-07 | 100 |