FFCP PHASE1:Hg19::chr12:52912957..52912973,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52912957..52912973,-
|short_description=p17@KRT5
|description=CAGE_peak_17_at_KRT5_5end
|association_with_transcript=-56bp_to_ENST00000551188_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3852 | |EntrezGene=3852 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6442 | |HGNC=6442 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-56bp_to_ENST00000551188_5end | |||
|cluster_id=chr12:52912957..52912973,- | |||
|coexpression_cluster_id=C458 | |||
|description=CAGE_peak_17_at_KRT5_5end | |||
|id=chr12:52912957..52912973,- | |||
|ontology_enrichment_celltype=CL:0002076!3.49e-19!43;CL:0002623!1.24e-14!3;CL:0000223!4.84e-13!59;CL:0002251!1.87e-12!21;CL:0000066!8.89e-10!254;CL:0000622!6.10e-09!5;CL:0002368!8.22e-08!13;CL:0000154!1.65e-07!6;CL:0002621!6.52e-07!3;CL:0000349!9.74e-07!3;CL:0002577!9.74e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002623;1.11e-98;3!CL:0000622;1.10e-59;5!CL:0000154;6.35e-50;6!CL:0000150;1.24e-33;9!CL:0002251;6.78e-27;20!CL:0002076;9.73e-10;42!CL:0000151;1.26e-09;36!CL:0000244;1.44e-09;4!CL:0000731;1.44e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,1.11e-98,3;CL:0000622,1.10e-59,5;CL:0000154,6.35e-50,6;CL:0000150,1.24e-33,9;CL:0002251,7.25e-27,20;CL:0002076,3.76e-13,42;CL:0000223,1.11e-09,58;CL:0000244,1.44e-09,4;CL:0000731,1.44e-09,4;CL:0000151,5.00e-09,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.73e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.99e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.99e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000166!2.28e-15!21;UBERON:0000165!9.19e-14!28;UBERON:0000930!9.19e-14!28;UBERON:0000161!9.01e-13!35;UBERON:0001004!2.17e-11!72;UBERON:0003102!4.00e-09!95;UBERON:0001444!8.55e-09!48;UBERON:0003729!1.80e-08!5;UBERON:0004119!7.83e-08!169;UBERON:0000925!7.83e-08!169;UBERON:0006595!7.83e-08!169;UBERON:0001044!1.65e-07!6;UBERON:0003293!1.65e-07!6;UBERON:0003294!1.65e-07!6;UBERON:0010047!1.65e-07!6;UBERON:0000167!1.65e-07!6;UBERON:0003408!2.99e-07!10;UBERON:0001949!6.52e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;6.35e-50;6!UBERON:0003293;6.35e-50;6!UBERON:0003294;6.35e-50;6!UBERON:0010047;6.35e-50;6!UBERON:0003408;6.35e-50;6!UBERON:0000167;6.35e-50;6!UBERON:0000161;2.86e-28;19!UBERON:0000166;2.86e-28;19!UBERON:0001041;5.78e-22;14!UBERON:0000165;2.02e-19;28!UBERON:0002365;1.09e-10;31!UBERON:0002330;1.09e-10;31!UBERON:0003343;1.44e-09;4!UBERON:0004785;1.44e-09;4!UBERON:0007811;4.27e-09;52!UBERON:0004921;1.47e-08;33!UBERON:0000365;6.55e-08;5!UBERON:0000153;1.07e-07;54!UBERON:0000033;1.34e-07;50!UBERON:0001444;4.54e-07;48!UBERON:0000974;8.48e-07;6!UBERON:0005910;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,6.35e-50,6;UBERON:0003293,6.35e-50,6;UBERON:0003294,6.35e-50,6;UBERON:0010047,6.35e-50,6;UBERON:0000167,6.35e-50,6;UBERON:0003408,2.27e-30,10;UBERON:0000166,1.71e-24,22;UBERON:0000165,9.35e-19,29;UBERON:0000930,9.35e-19,29;UBERON:0000161,3.08e-15,36;UBERON:0001444,2.34e-11,49;UBERON:0002365,2.29e-10,31;UBERON:0002330,2.29e-10,31;UBERON:0000033,5.25e-10,56;UBERON:0003343,1.57e-09,4;UBERON:0004785,1.57e-09,4;UBERON:0000153,4.34e-09,62;UBERON:0007811,4.34e-09,62;UBERON:0000365,6.55e-08,5;UBERON:0001004,1.07e-07,74;UBERON:0005910,8.48e-07,6 | |||
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| ||
|short_description=p17@KRT5 | |||
}} | }} |
Latest revision as of 23:38, 18 September 2015
Short description: | p17@KRT5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_KRT5_5end |
Coexpression cluster: | C458_salivary_parietal_middle_locus_medial_occipital_globus |
Association with transcript: | -56bp_to_ENST00000551188_5end |
EntrezGene: | KRT5 |
HGNC: | 6442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 1.11e-98 | 3 |
acinar cell | 1.10e-59 | 5 |
protein secreting cell | 6.35e-50 | 6 |
glandular epithelial cell | 1.24e-33 | 9 |
epithelial cell of alimentary canal | 7.25e-27 | 20 |
endo-epithelial cell | 3.76e-13 | 42 |
endodermal cell | 1.11e-09 | 58 |
transitional epithelial cell | 1.44e-09 | 4 |
urothelial cell | 1.44e-09 | 4 |
secretory cell | 5.00e-09 | 36 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 6.35e-50 | 6 |
gland of oral region | 6.35e-50 | 6 |
gland of foregut | 6.35e-50 | 6 |
oral gland | 6.35e-50 | 6 |
oral cavity | 6.35e-50 | 6 |
gland of gut | 2.27e-30 | 10 |
oral opening | 1.71e-24 | 22 |
mouth | 9.35e-19 | 29 |
stomodeum | 9.35e-19 | 29 |
orifice | 3.08e-15 | 36 |
subdivision of head | 2.34e-11 | 49 |
exocrine gland | 2.29e-10 | 31 |
exocrine system | 2.29e-10 | 31 |
head | 5.25e-10 | 56 |
mucosa of oral region | 1.57e-09 | 4 |
respiratory system mucosa | 1.57e-09 | 4 |
anterior region of body | 4.34e-09 | 62 |
craniocervical region | 4.34e-09 | 62 |
urothelium | 6.55e-08 | 5 |
respiratory system | 1.07e-07 | 74 |
transitional epithelium | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.99e-10 | 14 |