FFCP PHASE1:Hg19::chr12:52431016..52431071,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52431016..52431071,+
|short_description=p4@NR4A1
|description=CAGE_peak_4_at_NR4A1_5end
|association_with_transcript=0bp_to_ENST00000553200_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000553200_5end | |||
|cluster_id=chr12:52431016..52431071,+ | |||
|description=CAGE_peak_4_at_NR4A1_5end | |||
|id=chr12:52431016..52431071,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.94e-16!42;CL:0000860!1.06e-13!45;CL:0000557!3.03e-09!71;CL:0000766!7.32e-09!76;CL:0000839!2.29e-07!70;CL:0000148!4.24e-07!10;CL:0000541!4.24e-07!10;CL:0002009!8.48e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.72e-11;33!CL:0002057;1.72e-11;33!CL:0000148;1.34e-10;10!CL:0000766;7.71e-10;69!CL:0000576;5.06e-09;48!CL:0000473;4.46e-08;39!CL:0000234;4.46e-08;39!CL:0000097;2.27e-07;5!CL:0000147;9.54e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.43e-18,42;CL:0002057,1.43e-18,42;CL:0000766,8.36e-18,72;CL:0000557,1.09e-17,67;CL:0000473,4.18e-16,48;CL:0000234,4.18e-16,48;CL:0000839,9.33e-15,66;CL:0002009,3.50e-13,61;CL:0002194,1.07e-11,59;CL:0000576,1.07e-11,59;CL:0000040,1.07e-11,59;CL:0000559,1.07e-11,59;CL:0000148,1.24e-10,10;CL:0000541,1.24e-10,10;CL:0000763,5.39e-10,108;CL:0000049,5.39e-10,108;CL:0000738,1.37e-08,136;CL:0002393,5.62e-08,9;CL:0002397,5.62e-08,9;CL:0000097,2.07e-07,5;CL:0002028,2.07e-07,5;CL:0000147,9.01e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-13;42 | |||
|ontology_enrichment_disease=DOID:3095!1.81e-07!22;DOID:2994!1.81e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.37e-11!115;UBERON:0001474!7.71e-09!86;UBERON:0002371!4.59e-08!80;UBERON:0004765!1.05e-07!101;UBERON:0001434!1.05e-07!101;UBERON:0000062!1.09e-07!511;UBERON:0000073!6.79e-07!94;UBERON:0001016!6.79e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.33e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.37e-15,76;UBERON:0001474,2.92e-15,82;UBERON:0002390,1.57e-13,98;UBERON:0003061,1.57e-13,98;UBERON:0004765,1.18e-12,90;UBERON:0002405,1.52e-12,93;UBERON:0001434,2.26e-11,100;UBERON:0002193,6.24e-11,108 | |||
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| ||
|short_description=p4@NR4A1 | |||
}} | }} |
Latest revision as of 21:04, 18 September 2015
Short description: | p4@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NR4A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553200_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.43e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.43e-18 | 42 |
myeloid leukocyte | 8.36e-18 | 72 |
granulocyte monocyte progenitor cell | 1.09e-17 | 67 |
defensive cell | 4.18e-16 | 48 |
phagocyte | 4.18e-16 | 48 |
myeloid lineage restricted progenitor cell | 9.33e-15 | 66 |
macrophage dendritic cell progenitor | 3.50e-13 | 61 |
monopoietic cell | 1.07e-11 | 59 |
monocyte | 1.07e-11 | 59 |
monoblast | 1.07e-11 | 59 |
promonocyte | 1.07e-11 | 59 |
melanocyte | 1.24e-10 | 10 |
melanoblast | 1.24e-10 | 10 |
myeloid cell | 5.39e-10 | 108 |
common myeloid progenitor | 5.39e-10 | 108 |
leukocyte | 1.37e-08 | 136 |
intermediate monocyte | 5.62e-08 | 9 |
CD14-positive, CD16-positive monocyte | 5.62e-08 | 9 |
mast cell | 2.07e-07 | 5 |
basophil mast progenitor cell | 2.07e-07 | 5 |
pigment cell | 9.01e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.37e-15 | 76 |
bone element | 2.92e-15 | 82 |
hematopoietic system | 1.57e-13 | 98 |
blood island | 1.57e-13 | 98 |
skeletal element | 1.18e-12 | 90 |
immune system | 1.52e-12 | 93 |
skeletal system | 2.26e-11 | 100 |
hemolymphoid system | 6.24e-11 | 108 |