FFCP PHASE1:Hg19::chr12:5198401..5198415,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:5198401..5198415,+
|short_description=p@chr12:5198401..5198415,+
|description=CAGE_peak_at_chr12:5198401..5198415,+
|association_with_transcript=NA
|Entr...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:5198401..5198415,+ | |||
|coexpression_cluster_id=C182 | |||
|description=CAGE_peak_at_chr12:5198401..5198415,+ | |||
|id=chr12:5198401..5198415,+ | |||
|ontology_enrichment_celltype=CL:0000148!1.33e-14!10;CL:0000541!1.33e-14!10;CL:0000147!1.99e-14!14;CL:0000346!5.72e-09!3;CL:1000428!5.72e-09!3;CL:0002567!6.94e-09!3;CL:0000333!1.57e-07!41;CL:0002566!2.36e-07!1;CL:0000710!3.70e-07!20;CL:0000864!5.37e-07!1;CL:0000091!5.37e-07!1;CL:0002559!6.39e-07!4;CL:0002598!7.15e-07!1;CL:0000319!8.02e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000346;3.75e-53;3!CL:1000428;3.75e-53;3!CL:0002566;1.81e-40;1!CL:0002559;1.99e-32;5!CL:0000148;8.13e-17;10!CL:0002567;1.71e-14;3!CL:0000147;2.51e-12;14!CL:0000710;6.17e-09;20!CL:0000075;7.24e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,2.87e-53,3;CL:1000428,2.87e-53,3;CL:0002566,1.48e-40,1;CL:0002559,1.70e-32,5;CL:0000148,8.81e-17,10;CL:0000541,8.81e-17,10;CL:0000333,2.26e-15,41;CL:0002567,2.09e-14,3;CL:0000147,2.66e-12,14;CL:0000133,4.78e-11,59;CL:0000221,3.20e-09,72;CL:0000710,6.42e-09,20;CL:0000075,7.45e-07,27 | |||
|ontology_enrichment_development_v019=CL:0000133;2.82e-08;59 | |||
|ontology_enrichment_disease=DOID:5662!3.78e-07!1;DOID:3571!5.37e-07!1;DOID:3030!8.02e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000412!5.72e-09!3;UBERON:0001992!5.72e-09!3;UBERON:0002073!6.39e-07!4;UBERON:0005086!6.39e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;3.75e-53;3!UBERON:0001992;3.75e-53;3!UBERON:0002073;1.99e-32;5!UBERON:0002067;1.48e-18;9!UBERON:0001003;1.42e-11;15!UBERON:0007376;1.42e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,2.87e-53,3;UBERON:0001992,2.87e-53,3;UBERON:0002073,1.70e-32,5;UBERON:0005086,1.70e-32,5;UBERON:0002067,1.35e-18,9;UBERON:0004016,1.35e-18,9;UBERON:0010083,1.35e-18,9;UBERON:0001003,1.34e-11,15;UBERON:0007376,1.34e-11,15;UBERON:0007383,1.34e-11,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52394946301206,0.763976851116555,1.17217447210047,0,0.514137463516618,0.600686115687835,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0.511707249066704,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0.464033759878494,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0,0,18.5697728448014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320965466756673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52394946301206,0.763976851116555,1.17217447210047,0,0.514137463516618,0.600686115687835,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0.511707249066704,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0.464033759878494,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0,0,18.5697728448014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320965466756673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:5198401..5198415,+ | |||
}} | }} |
Latest revision as of 09:22, 24 July 2015
Short description: | p@chr12:5198401..5198415, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:5198401..5198415, + |
Coexpression cluster: | C182_renal_mature_mesothelioma_lung_Mammary_Adipocyte_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 2.87e-53 | 3 |
stem cell of epidermis | 2.87e-53 | 3 |
dark melanocyte | 1.48e-40 | 1 |
hair follicle cell | 1.70e-32 | 5 |
melanocyte | 8.81e-17 | 10 |
melanoblast | 8.81e-17 | 10 |
migratory neural crest cell | 2.26e-15 | 41 |
light melanocyte | 2.09e-14 | 3 |
pigment cell | 2.66e-12 | 14 |
neurectodermal cell | 4.78e-11 | 59 |
ectodermal cell | 3.20e-09 | 72 |
neurecto-epithelial cell | 6.42e-09 | 20 |
columnar/cuboidal epithelial cell | 7.45e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 2.87e-53 | 3 |
papillary layer of dermis | 2.87e-53 | 3 |
hair follicle | 1.70e-32 | 5 |
hair follicle placode | 1.70e-32 | 5 |
dermis | 1.35e-18 | 9 |
dermatome | 1.35e-18 | 9 |
future dermis | 1.35e-18 | 9 |
skin epidermis | 1.34e-11 | 15 |
outer epithelium | 1.34e-11 | 15 |
enveloping layer of ectoderm | 1.34e-11 | 15 |