FFCP PHASE1:Hg19::chr3:9291166..9291177,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9901 | |EntrezGene=9901 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19744 | |HGNC=19744 | ||
|TSSclassifier=strong | |||
|UniProt=O43295 | |UniProt=O43295 | ||
|association_with_transcript=-103bp_to_ENST00000383836_5end | |association_with_transcript=-103bp_to_ENST00000383836_5end | ||
|cluster_id=chr3:9291166..9291177,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_SRGAP3_5end | |description=CAGE_peak_4_at_SRGAP3_5end | ||
|id=chr3:9291166..9291177,- | |id=chr3:9291166..9291177,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002595;3.22e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,3.49e-09,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.48e-118;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.34e-42!57;UBERON:0005068!3.34e-42!57;UBERON:0006241!3.34e-42!57;UBERON:0007135!3.34e-42!57;UBERON:0002616!2.99e-40!59;UBERON:0005743!3.26e-39!86;UBERON:0001017!4.55e-39!82;UBERON:0003075!5.69e-35!86;UBERON:0007284!5.69e-35!86;UBERON:0000955!6.12e-35!69;UBERON:0006238!6.12e-35!69;UBERON:0000073!1.42e-34!94;UBERON:0001016!1.42e-34!94;UBERON:0002346!5.54e-33!90;UBERON:0002020!4.90e-30!34;UBERON:0003528!4.90e-30!34;UBERON:0001893!5.14e-30!34;UBERON:0002791!4.35e-28!33;UBERON:0007023!8.17e-27!115;UBERON:0002780!1.18e-26!41;UBERON:0001890!1.18e-26!41;UBERON:0006240!1.18e-26!41;UBERON:0003080!6.82e-26!42;UBERON:0001869!9.60e-26!32;UBERON:0000033!1.07e-25!123;UBERON:0004121!2.50e-24!169;UBERON:0000153!4.98e-24!129;UBERON:0007811!4.98e-24!129;UBERON:0000924!1.69e-23!173;UBERON:0006601!1.69e-23!173;UBERON:0003056!1.71e-21!61;UBERON:0000956!9.09e-21!25;UBERON:0000203!9.09e-21!25;UBERON:0004733!1.29e-18!12;UBERON:0002028!1.29e-18!12;UBERON:0007277!1.29e-18!12;UBERON:0003076!4.54e-18!15;UBERON:0003057!4.54e-18!15;UBERON:0002619!8.03e-18!22;UBERON:0004732!4.90e-17!13;UBERON:0001950!6.71e-17!20;UBERON:0002680!3.06e-15!9;UBERON:0001895!3.06e-15!9;UBERON:0010092!3.06e-15!9;UBERON:0002298!9.21e-13!8;UBERON:0002308!8.11e-11!9;UBERON:0000125!8.11e-11!9;UBERON:0001872!7.57e-10!5;UBERON:0006331!2.82e-09!3;UBERON:0000988!4.17e-09!3;UBERON:0000025!7.12e-09!194;UBERON:0000483!2.32e-08!309;UBERON:0002037!2.43e-08!6;UBERON:0006215!2.43e-08!6;UBERON:0000119!3.54e-08!312;UBERON:0000064!6.48e-08!219;UBERON:0002420!1.35e-07!9;UBERON:0007245!1.35e-07!9;UBERON:0010009!1.35e-07!9;UBERON:0010011!1.35e-07!9;UBERON:0000454!1.35e-07!9;UBERON:0000477!2.35e-07!286;UBERON:0004111!2.63e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;9.96e-60;6!UBERON:0002680;3.32e-40;9!UBERON:0001895;3.32e-40;9!UBERON:0004733;2.00e-30;12!UBERON:0002028;2.00e-30;12!UBERON:0004732;3.65e-28;13!UBERON:0003834;3.22e-09;5!UBERON:0001533;3.22e-09;5!UBERON:0003513;6.04e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,8.15e-60,6;UBERON:0006215,8.15e-60,6;UBERON:0002680,2.91e-40,9;UBERON:0001895,2.91e-40,9;UBERON:0010092,2.91e-40,9;UBERON:0004733,1.81e-30,12;UBERON:0002028,1.81e-30,12;UBERON:0007277,1.81e-30,12;UBERON:0004732,3.33e-28,13;UBERON:0003076,1.40e-24,15;UBERON:0003057,1.40e-24,15;UBERON:0003834,3.49e-09,5;UBERON:0001533,3.49e-09,5;UBERON:0000073,1.99e-07,53;UBERON:0002616,1.99e-07,53;UBERON:0001049,4.48e-07,56;UBERON:0005068,4.48e-07,56;UBERON:0006241,4.48e-07,56;UBERON:0007135,4.48e-07,56;UBERON:0003513,6.39e-07,7 | |||
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| ||
|short_description=p4@SRGAP3 | |short_description=p4@SRGAP3 | ||
}} | }} |
Latest revision as of 19:37, 19 September 2015
Short description: | p4@SRGAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SRGAP3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -103bp_to_ENST00000383836_5end |
EntrezGene: | SRGAP3 |
HGNC: | 19744 |
UniProt: | O43295 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 3.49e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 8.15e-60 | 6 |
rhombic lip | 8.15e-60 | 6 |
regional part of metencephalon | 2.91e-40 | 9 |
metencephalon | 2.91e-40 | 9 |
future metencephalon | 2.91e-40 | 9 |
segmental subdivision of hindbrain | 1.81e-30 | 12 |
hindbrain | 1.81e-30 | 12 |
presumptive hindbrain | 1.81e-30 | 12 |
segmental subdivision of nervous system | 3.33e-28 | 13 |
posterior neural tube | 1.40e-24 | 15 |
chordal neural plate | 1.40e-24 | 15 |
thoracic segment blood vessel | 3.49e-09 | 5 |
subclavian artery | 3.49e-09 | 5 |
regional part of nervous system | 1.99e-07 | 53 |
regional part of brain | 1.99e-07 | 53 |
neural tube | 4.48e-07 | 56 |
neural rod | 4.48e-07 | 56 |
future spinal cord | 4.48e-07 | 56 |
neural keel | 4.48e-07 | 56 |
trunk blood vessel | 6.39e-07 | 7 |