FFCP PHASE1:Hg19::chr3:84892515..84892517,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:84892515..84892517,+ | |||
|coexpression_cluster_id=C1875 | |||
|description=CAGE_peak_at_chr3:84892515..84892517,+ | |description=CAGE_peak_at_chr3:84892515..84892517,+ | ||
|id=chr3:84892515..84892517,+ | |id=chr3:84892515..84892517,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.01e-78!42;CL:0000860!3.03e-72!45;CL:0000763!3.89e-60!112;CL:0000049!3.89e-60!112;CL:0000839!2.13e-56!70;CL:0000557!1.20e-55!71;CL:0000766!4.37e-54!76;CL:0002009!4.41e-52!65;CL:0002194!7.29e-51!63;CL:0000576!7.29e-51!63;CL:0000040!7.29e-51!63;CL:0000559!7.29e-51!63;CL:0002032!1.08e-47!165;CL:0000837!1.08e-47!165;CL:0000037!5.32e-47!172;CL:0000566!5.32e-47!172;CL:0000738!5.40e-44!140;CL:0000988!1.19e-43!182;CL:0002031!3.81e-40!124;CL:0002087!2.85e-34!119;CL:0000134!2.84e-15!358;CL:0002320!1.04e-14!365;CL:0000219!9.86e-13!390;CL:0000723!1.14e-10!436;CL:0000048!2.24e-10!430;CL:0000453!2.75e-10!5;CL:0000034!3.18e-10!444;CL:0000898!3.39e-09!3;CL:0002393!1.82e-07!9;CL:0002397!1.82e-07!9;CL:0000815!8.46e-07!2;CL:0000792!8.46e-07!2;CL:0002677!8.46e-07!2 | |ontology_enrichment_celltype=CL:0002057!4.01e-78!42;CL:0000860!3.03e-72!45;CL:0000763!3.89e-60!112;CL:0000049!3.89e-60!112;CL:0000839!2.13e-56!70;CL:0000557!1.20e-55!71;CL:0000766!4.37e-54!76;CL:0002009!4.41e-52!65;CL:0002194!7.29e-51!63;CL:0000576!7.29e-51!63;CL:0000040!7.29e-51!63;CL:0000559!7.29e-51!63;CL:0002032!1.08e-47!165;CL:0000837!1.08e-47!165;CL:0000037!5.32e-47!172;CL:0000566!5.32e-47!172;CL:0000738!5.40e-44!140;CL:0000988!1.19e-43!182;CL:0002031!3.81e-40!124;CL:0002087!2.85e-34!119;CL:0000134!2.84e-15!358;CL:0002320!1.04e-14!365;CL:0000219!9.86e-13!390;CL:0000723!1.14e-10!436;CL:0000048!2.24e-10!430;CL:0000453!2.75e-10!5;CL:0000034!3.18e-10!444;CL:0000898!3.39e-09!3;CL:0002393!1.82e-07!9;CL:0002397!1.82e-07!9;CL:0000815!8.46e-07!2;CL:0000792!8.46e-07!2;CL:0002677!8.46e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.29e-58;33!CL:0002057;3.29e-58;33!CL:0000473;3.21e-41;39!CL:0000234;3.21e-41;39!CL:0000576;6.06e-31;48!CL:0000766;1.60e-21;69!CL:0000453;2.48e-15;5!CL:0000763;1.94e-11;100!CL:0002087;6.81e-11;104!CL:0000738;5.02e-10;136!CL:0000990;9.54e-09;8!CL:0000451;3.08e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.13e-58,42;CL:0002057,2.13e-58,42;CL:0000473,1.01e-50,48;CL:0000234,1.01e-50,48;CL:0002194,5.74e-40,59;CL:0000576,5.74e-40,59;CL:0000040,5.74e-40,59;CL:0000559,5.74e-40,59;CL:0000839,9.24e-40,66;CL:0000557,3.96e-39,67;CL:0002009,1.40e-38,61;CL:0000766,3.14e-36,72;CL:0000763,2.99e-35,108;CL:0000049,2.99e-35,108;CL:0000738,2.67e-27,136;CL:0002032,8.13e-25,161;CL:0000837,8.13e-25,161;CL:0000037,1.23e-23,168;CL:0002031,5.13e-23,120;CL:0000988,2.98e-22,177;CL:0002087,1.43e-21,115;CL:0000453,3.01e-15,5;CL:0000134,3.16e-09,354;CL:0002320,5.69e-09,361;CL:0000990,1.06e-08,8;CL:0000219,4.56e-08,386;CL:0000451,3.36e-07,10;CL:0000048,5.86e-07,427;CL:0000723,8.35e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;8.92e-39;42!CL:0000049;2.73e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.11e-48!80;UBERON:0001474!3.80e-44!86;UBERON:0002390!1.12e-39!102;UBERON:0003061!1.12e-39!102;UBERON:0004765!4.85e-36!101;UBERON:0001434!4.85e-36!101;UBERON:0002193!3.67e-35!112;UBERON:0002405!3.60e-32!115;UBERON:0002204!1.09e-17!167;UBERON:0002384!6.05e-14!375;UBERON:0003081!4.50e-13!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.52e-34,76;UBERON:0001474,1.79e-31,82;UBERON:0004765,2.02e-28,90;UBERON:0002405,2.07e-27,93;UBERON:0002390,7.35e-26,98;UBERON:0003061,7.35e-26,98;UBERON:0001434,2.78e-25,100;UBERON:0002193,3.47e-23,108;UBERON:0002204,7.23e-14,167;UBERON:0003081,8.08e-11,203;UBERON:0002384,1.27e-08,371 | |||
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|short_description=p@chr3:84892515..84892517,+ | |short_description=p@chr3:84892515..84892517,+ | ||
}} | }} |
Latest revision as of 23:44, 29 July 2015
Short description: | p@chr3:84892515..84892517, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:84892515..84892517, + |
Coexpression cluster: | C1875_migratory_CD14_CD14CD16_CD4_Basophils_NK_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.13e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.13e-58 | 42 |
defensive cell | 1.01e-50 | 48 |
phagocyte | 1.01e-50 | 48 |
monopoietic cell | 5.74e-40 | 59 |
monocyte | 5.74e-40 | 59 |
monoblast | 5.74e-40 | 59 |
promonocyte | 5.74e-40 | 59 |
myeloid lineage restricted progenitor cell | 9.24e-40 | 66 |
granulocyte monocyte progenitor cell | 3.96e-39 | 67 |
macrophage dendritic cell progenitor | 1.40e-38 | 61 |
myeloid leukocyte | 3.14e-36 | 72 |
myeloid cell | 2.99e-35 | 108 |
common myeloid progenitor | 2.99e-35 | 108 |
leukocyte | 2.67e-27 | 136 |
hematopoietic oligopotent progenitor cell | 8.13e-25 | 161 |
hematopoietic multipotent progenitor cell | 8.13e-25 | 161 |
hematopoietic stem cell | 1.23e-23 | 168 |
hematopoietic lineage restricted progenitor cell | 5.13e-23 | 120 |
hematopoietic cell | 2.98e-22 | 177 |
nongranular leukocyte | 1.43e-21 | 115 |
Langerhans cell | 3.01e-15 | 5 |
mesenchymal cell | 3.16e-09 | 354 |
connective tissue cell | 5.69e-09 | 361 |
conventional dendritic cell | 1.06e-08 | 8 |
motile cell | 4.56e-08 | 386 |
dendritic cell | 3.36e-07 | 10 |
multi fate stem cell | 5.86e-07 | 427 |
somatic stem cell | 8.35e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.52e-34 | 76 |
bone element | 1.79e-31 | 82 |
skeletal element | 2.02e-28 | 90 |
immune system | 2.07e-27 | 93 |
hematopoietic system | 7.35e-26 | 98 |
blood island | 7.35e-26 | 98 |
skeletal system | 2.78e-25 | 100 |
hemolymphoid system | 3.47e-23 | 108 |
musculoskeletal system | 7.23e-14 | 167 |
lateral plate mesoderm | 8.08e-11 | 203 |
connective tissue | 1.27e-08 | 371 |