FFCP PHASE1:Hg19::chr3:56591184..56591255,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285331 | |EntrezGene=285331 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27709 | |HGNC=27709 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCY0,A2RUB6,C9JYB8,F8WB87,F2Z2K6,F8WDJ0,F8WCB1 | |UniProt=F8WCY0,A2RUB6,C9JYB8,F8WB87,F2Z2K6,F8WDJ0,F8WCB1 | ||
|association_with_transcript=0bp_to_ENST00000326595,ENST00000341455,ENST00000394672,ENST00000422222,ENST00000422788,ENST00000434467,ENST00000439445,ENST00000442522,ENST00000459746,ENST00000460838,ENST00000471681,ENST00000472582,NM_001012506,NM_001141947,NR_024460,uc003dhu.2,uc003dhv.2,uc003dhw.2,uc003dhx.2,uc003dhy.2,uc003dhz.2_5end | |association_with_transcript=0bp_to_ENST00000326595,ENST00000341455,ENST00000394672,ENST00000422222,ENST00000422788,ENST00000434467,ENST00000439445,ENST00000442522,ENST00000459746,ENST00000460838,ENST00000471681,ENST00000472582,NM_001012506,NM_001141947,NR_024460,uc003dhu.2,uc003dhv.2,uc003dhw.2,uc003dhx.2,uc003dhy.2,uc003dhz.2_5end | ||
|cluster_id=chr3:56591184..56591255,+ | |||
|coexpression_cluster_id=C2295 | |||
|description=CAGE_peak_1_at_CCDC66_5end | |description=CAGE_peak_1_at_CCDC66_5end | ||
|id=chr3:56591184..56591255,+ | |id=chr3:56591184..56591255,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.45e-11!53;CL:0000051!1.45e-11!53;CL:0000838!2.08e-11!52;CL:0000791!1.60e-10!18;CL:0000789!1.60e-10!18;CL:0002420!1.60e-10!18;CL:0002419!1.60e-10!18;CL:0000790!1.60e-10!18;CL:0000084!7.14e-10!25;CL:0000827!7.14e-10!25;CL:0000625!8.36e-08!11 | |ontology_enrichment_celltype=CL:0000542!1.45e-11!53;CL:0000051!1.45e-11!53;CL:0000838!2.08e-11!52;CL:0000791!1.60e-10!18;CL:0000789!1.60e-10!18;CL:0002420!1.60e-10!18;CL:0002419!1.60e-10!18;CL:0000790!1.60e-10!18;CL:0000084!7.14e-10!25;CL:0000827!7.14e-10!25;CL:0000625!8.36e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.51e-10;18!CL:0000789;1.51e-10;18!CL:0002419;1.51e-10;18!CL:0000084;7.25e-10;25!CL:0000625;8.00e-08;11!CL:0000542;1.42e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.47e-11,53;CL:0000051,1.47e-11,53;CL:0000838,2.11e-11,52;CL:0000791,1.60e-10,18;CL:0000789,1.60e-10,18;CL:0002420,1.60e-10,18;CL:0002419,1.60e-10,18;CL:0000790,1.60e-10,18;CL:0000084,7.14e-10,25;CL:0000827,7.14e-10,25;CL:0000625,8.36e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.51e-10;18!CL:0000051;1.42e-07;53!UBERON:0006601;6.24e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.47e-28!115;UBERON:0001049!2.30e-17!57;UBERON:0005068!2.30e-17!57;UBERON:0006241!2.30e-17!57;UBERON:0007135!2.30e-17!57;UBERON:0001017!5.17e-16!82;UBERON:0002780!3.22e-15!41;UBERON:0001890!3.22e-15!41;UBERON:0006240!3.22e-15!41;UBERON:0000073!6.68e-15!94;UBERON:0001016!6.68e-15!94;UBERON:0005743!8.41e-15!86;UBERON:0003080!1.33e-14!42;UBERON:0002616!4.94e-14!59;UBERON:0000955!1.30e-13!69;UBERON:0006238!1.30e-13!69;UBERON:0002020!5.96e-12!34;UBERON:0003528!5.96e-12!34;UBERON:0001893!8.56e-12!34;UBERON:0002791!1.94e-11!33;UBERON:0001869!5.43e-11!32;UBERON:0002346!4.77e-10!90;UBERON:0003075!1.78e-09!86;UBERON:0007284!1.78e-09!86;UBERON:0002619!1.94e-08!22;UBERON:0000956!5.13e-08!25;UBERON:0000203!5.13e-08!25;UBERON:0001950!1.52e-07!20;UBERON:0000153!3.20e-07!129;UBERON:0007811!3.20e-07!129;UBERON:0003056!3.49e-07!61;UBERON:0000924!7.19e-07!173;UBERON:0006601!7.19e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.94e-11;41!UBERON:0001890;2.94e-11;41!UBERON:0000073;1.65e-10;53!UBERON:0002616;1.65e-10;53!UBERON:0003528;3.30e-10;34!UBERON:0002020;3.30e-10;34!UBERON:0002791;4.68e-10;32!UBERON:0001893;5.00e-10;34!UBERON:0001869;5.86e-10;32!UBERON:0007023;9.30e-09;114!UBERON:0002619;2.63e-08;22!UBERON:0000956;6.04e-08;25!UBERON:0000203;6.04e-08;25!UBERON:0001950;2.04e-07;20!UBERON:0001017;3.46e-07;75!UBERON:0001016;6.41e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.58e-27,114;UBERON:0001049,6.28e-18,56;UBERON:0005068,6.28e-18,56;UBERON:0006241,6.28e-18,56;UBERON:0007135,6.28e-18,56;UBERON:0000073,7.40e-17,53;UBERON:0002616,7.40e-17,53;UBERON:0001017,2.05e-16,81;UBERON:0001016,2.11e-16,89;UBERON:0002780,3.22e-15,41;UBERON:0001890,3.22e-15,41;UBERON:0003080,3.22e-15,41;UBERON:0006240,3.22e-15,41;UBERON:0000955,5.18e-14,68;UBERON:0006238,5.18e-14,68;UBERON:0003528,5.96e-12,34;UBERON:0002020,5.96e-12,34;UBERON:0001893,8.55e-12,34;UBERON:0002791,4.58e-11,32;UBERON:0001869,5.43e-11,32;UBERON:0002346,1.09e-10,86;UBERON:0003075,4.16e-10,82;UBERON:0007284,4.16e-10,82;UBERON:0002619,1.94e-08,22;UBERON:0000956,5.13e-08,25;UBERON:0000203,5.13e-08,25;UBERON:0003056,9.35e-08,61;UBERON:0011216,1.24e-07,223;UBERON:0001950,1.52e-07,20;UBERON:0010371,3.22e-07,104;UBERON:0004121,5.42e-07,171;UBERON:0000924,5.42e-07,171;UBERON:0006601,5.42e-07,171 | |||
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| ||
|short_description=p1@CCDC66 | |short_description=p1@CCDC66 | ||
}} | }} |
Latest revision as of 03:35, 19 September 2015
Short description: | p1@CCDC66 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC66_5end |
Coexpression cluster: | C2295_CD4_CD8_cerebellum_Small_pituitary_Mast_cord |
Association with transcript: | 0bp_to_ENST00000326595, ENST00000341455, ENST00000394672, ENST00000422222, ENST00000422788, ENST00000434467, ENST00000439445, ENST00000442522, ENST00000459746, ENST00000460838, ENST00000471681, ENST00000472582, NM_001012506, NM_001141947, NR_024460, uc003dhu.2, uc003dhv.2, uc003dhw.2, uc003dhx.2, uc003dhy.2, uc003dhz.2_5end |
EntrezGene: | CCDC66 |
HGNC: | 27709 |
UniProt: | F8WCY0A2RUB6C9JYB8F8WB87F2Z2K6F8WDJ0F8WCB1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.47e-11 | 53 |
common lymphoid progenitor | 1.47e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.11e-11 | 52 |
mature alpha-beta T cell | 1.60e-10 | 18 |
alpha-beta T cell | 1.60e-10 | 18 |
immature T cell | 1.60e-10 | 18 |
mature T cell | 1.60e-10 | 18 |
immature alpha-beta T cell | 1.60e-10 | 18 |
T cell | 7.14e-10 | 25 |
pro-T cell | 7.14e-10 | 25 |
CD8-positive, alpha-beta T cell | 8.36e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.58e-27 | 114 |
neural tube | 6.28e-18 | 56 |
neural rod | 6.28e-18 | 56 |
future spinal cord | 6.28e-18 | 56 |
neural keel | 6.28e-18 | 56 |
regional part of nervous system | 7.40e-17 | 53 |
regional part of brain | 7.40e-17 | 53 |
central nervous system | 2.05e-16 | 81 |
nervous system | 2.11e-16 | 89 |
regional part of forebrain | 3.22e-15 | 41 |
forebrain | 3.22e-15 | 41 |
anterior neural tube | 3.22e-15 | 41 |
future forebrain | 3.22e-15 | 41 |
brain | 5.18e-14 | 68 |
future brain | 5.18e-14 | 68 |
brain grey matter | 5.96e-12 | 34 |
gray matter | 5.96e-12 | 34 |
telencephalon | 8.55e-12 | 34 |
regional part of telencephalon | 4.58e-11 | 32 |
cerebral hemisphere | 5.43e-11 | 32 |
neurectoderm | 1.09e-10 | 86 |
neural plate | 4.16e-10 | 82 |
presumptive neural plate | 4.16e-10 | 82 |
regional part of cerebral cortex | 1.94e-08 | 22 |
cerebral cortex | 5.13e-08 | 25 |
pallium | 5.13e-08 | 25 |
pre-chordal neural plate | 9.35e-08 | 61 |
organ system subdivision | 1.24e-07 | 223 |
neocortex | 1.52e-07 | 20 |
ecto-epithelium | 3.22e-07 | 104 |
ectoderm-derived structure | 5.42e-07 | 171 |
ectoderm | 5.42e-07 | 171 |
presumptive ectoderm | 5.42e-07 | 171 |