FFCP PHASE1:Hg19::chr12:4388045..4388063,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:4388045..4388063,+
|short_description=p18@CCND2
|description=CAGE_peak_18_at_CCND2_5end
|association_with_transcript=79bp_to_ENST00000541542_5end
|Entrez...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=894 | |EntrezGene=894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1583 | |HGNC=1583 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=79bp_to_ENST00000541542_5end | |||
|cluster_id=chr12:4388045..4388063,+ | |||
|coexpression_cluster_id=C166 | |||
|description=CAGE_peak_18_at_CCND2_5end | |||
|id=chr12:4388045..4388063,+ | |||
|ontology_enrichment_celltype=CL:0002194!2.48e-15!63;CL:0000576!2.48e-15!63;CL:0000040!2.48e-15!63;CL:0000559!2.48e-15!63;CL:0002009!1.46e-14!65;CL:0002087!3.93e-13!119;CL:0000839!7.66e-13!70;CL:0000557!1.58e-12!71;CL:0002057!5.03e-12!42;CL:0002031!2.41e-11!124;CL:0000766!4.25e-11!76;CL:0000860!8.93e-11!45;CL:0000738!2.82e-09!140;CL:0002032!3.91e-08!165;CL:0000837!3.91e-08!165;CL:0000037!8.23e-08!172;CL:0000566!8.23e-08!172;CL:0000988!1.05e-07!182;CL:0000763!1.44e-07!112;CL:0000049!1.44e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000235;4.10e-29;6!CL:0000473;5.27e-23;39!CL:0000234;5.27e-23;39!CL:0000840;1.24e-16;5!CL:0000990;2.79e-11;8!CL:0000860;2.19e-10;33!CL:0002057;2.19e-10;33!CL:0000766;5.57e-10;69!CL:0000451;2.51e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,4.25e-29,6;CL:0002194,6.40e-28,59;CL:0000576,6.40e-28,59;CL:0000040,6.40e-28,59;CL:0000559,6.40e-28,59;CL:0002009,5.83e-27,61;CL:0000839,8.21e-25,66;CL:0000557,2.02e-24,67;CL:0000766,1.28e-22,72;CL:0000473,1.12e-20,48;CL:0000234,1.12e-20,48;CL:0000840,1.25e-16,5;CL:0001029,1.25e-16,5;CL:0000763,1.60e-14,108;CL:0000049,1.60e-14,108;CL:0002087,1.58e-13,115;CL:0002031,6.88e-13,120;CL:0000990,2.79e-11,8;CL:0000738,3.74e-11,136;CL:0000451,2.52e-09,10;CL:0002032,4.00e-09,161;CL:0000837,4.00e-09,161;CL:0000037,1.16e-08,168;CL:0000860,1.39e-08,42;CL:0002057,1.39e-08,42;CL:0000988,4.01e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;4.81e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.30e-10!80;UBERON:0002390!3.52e-09!102;UBERON:0003061!3.52e-09!102;UBERON:0002193!5.99e-09!112;UBERON:0001474!8.83e-09!86;UBERON:0004765!1.29e-08!101;UBERON:0001434!1.29e-08!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002426;1.19e-11;1!UBERON:0003831;1.19e-11;1!UBERON:0003898;1.19e-11;1!UBERON:0004830;1.19e-11;1!UBERON:0003830;1.19e-11;1!UBERON:0005175;1.19e-11;1!UBERON:0001774;1.19e-11;1!UBERON:0001103;1.19e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.39e-21,76;UBERON:0001474,1.14e-19,82;UBERON:0004765,8.96e-18,90;UBERON:0002405,3.80e-17,93;UBERON:0002390,3.49e-16,98;UBERON:0003061,3.49e-16,98;UBERON:0001434,7.97e-16,100;UBERON:0002193,1.60e-14,108;UBERON:0002426,8.64e-12,1;UBERON:0003831,8.64e-12,1;UBERON:0003898,8.64e-12,1;UBERON:0004830,8.64e-12,1;UBERON:0003830,8.64e-12,1;UBERON:0005175,8.64e-12,1;UBERON:0001774,8.64e-12,1;UBERON:0001103,8.64e-12,1;UBERON:0010084,8.64e-12,1;UBERON:0002204,2.79e-10,167;UBERON:0003081,7.89e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0,0,0.286235987131057,0,0,0.152826811495903,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.755751887377619,0.727752183563449,0,1.6446715520873,0.309706370895104,0,0.256160706529101,0.236482229888585,1.03423704220986,3.22742341791913,1.35426486594342,0,0.818718450173537,0.449446968890169,0.918251677112708,2.56743221660875,3.19668562899521,0,0.199463657621632,0,0,0.56738522469114,0,0.251248665256743,0,0.65156653411535,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0.260118695119756,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,4.86821090482025,5.04976238167875,2.12732736830184,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14721838155602,0.243947412259191,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,24.1024393093415,9.51239438647861,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,4.86495122564762,0.502257091432126,6.32501818449095,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0.47003968731907,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.18714054040822,0.73254089635947,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0.370691816839509,0.208843899010911,0.134802265961354,1.60515529459758,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,0,0,1.28767814440971,1.33902874465124,0.268733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0,0.275078873194468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0.992332043623902,0.592834895693833,0,0,0,0,1.22538230705385,0.327872630709804,0,0,0.122026264901963,0,0,0,0.124192805882767,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0.161475645631851,0,0,0,0.183428598521679,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0.347716544605159,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,0.154348316215889,0,0,0,0,0,0,0,0,0.187967835959707,0,0.0999411559249289,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.378499274505237,0,1.14028650910293,0,0.26721740526556,0.18378979906969,0.50141507858475,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0,0,0.286235987131057,0,0,0.152826811495903,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.755751887377619,0.727752183563449,0,1.6446715520873,0.309706370895104,0,0.256160706529101,0.236482229888585,1.03423704220986,3.22742341791913,1.35426486594342,0,0.818718450173537,0.449446968890169,0.918251677112708,2.56743221660875,3.19668562899521,0,0.199463657621632,0,0,0.56738522469114,0,0.251248665256743,0,0.65156653411535,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0.260118695119756,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,4.86821090482025,5.04976238167875,2.12732736830184,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14721838155602,0.243947412259191,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,24.1024393093415,9.51239438647861,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,4.86495122564762,0.502257091432126,6.32501818449095,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0.47003968731907,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.18714054040822,0.73254089635947,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0.370691816839509,0.208843899010911,0.134802265961354,1.60515529459758,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,0,0,1.28767814440971,1.33902874465124,0.268733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0,0.275078873194468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0.992332043623902,0.592834895693833,0,0,0,0,1.22538230705385,0.327872630709804,0,0,0.122026264901963,0,0,0,0.124192805882767,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0.161475645631851,0,0,0,0.183428598521679,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0.347716544605159,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,0.154348316215889,0,0,0,0,0,0,0,0,0.187967835959707,0,0.0999411559249289,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.378499274505237,0,1.14028650910293,0,0.26721740526556,0.18378979906969,0.50141507858475,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0.961705476909699 | ||
|short_description=p18@CCND2 | |||
}} | }} |
Latest revision as of 08:38, 18 September 2015
Short description: | p18@CCND2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_CCND2_5end |
Coexpression cluster: | C166_Macrophage_Monocytederived_Dendritic_adipose_lymph_CD14_lung |
Association with transcript: | 79bp_to_ENST00000541542_5end |
EntrezGene: | CCND2 |
HGNC: | 1583 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 4.25e-29 | 6 |
monopoietic cell | 6.40e-28 | 59 |
monocyte | 6.40e-28 | 59 |
monoblast | 6.40e-28 | 59 |
promonocyte | 6.40e-28 | 59 |
macrophage dendritic cell progenitor | 5.83e-27 | 61 |
myeloid lineage restricted progenitor cell | 8.21e-25 | 66 |
granulocyte monocyte progenitor cell | 2.02e-24 | 67 |
myeloid leukocyte | 1.28e-22 | 72 |
defensive cell | 1.12e-20 | 48 |
phagocyte | 1.12e-20 | 48 |
immature conventional dendritic cell | 1.25e-16 | 5 |
common dendritic progenitor | 1.25e-16 | 5 |
myeloid cell | 1.60e-14 | 108 |
common myeloid progenitor | 1.60e-14 | 108 |
nongranular leukocyte | 1.58e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 6.88e-13 | 120 |
conventional dendritic cell | 2.79e-11 | 8 |
leukocyte | 3.74e-11 | 136 |
dendritic cell | 2.52e-09 | 10 |
hematopoietic oligopotent progenitor cell | 4.00e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.00e-09 | 161 |
hematopoietic stem cell | 1.16e-08 | 168 |
classical monocyte | 1.39e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.39e-08 | 42 |
hematopoietic cell | 4.01e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.39e-21 | 76 |
bone element | 1.14e-19 | 82 |
skeletal element | 8.96e-18 | 90 |
immune system | 3.80e-17 | 93 |
hematopoietic system | 3.49e-16 | 98 |
blood island | 3.49e-16 | 98 |
skeletal system | 7.97e-16 | 100 |
hemolymphoid system | 1.60e-14 | 108 |
chest muscle | 8.64e-12 | 1 |
respiratory system muscle | 8.64e-12 | 1 |
skeletal muscle of trunk | 8.64e-12 | 1 |
respiratory system skeletal muscle | 8.64e-12 | 1 |
thoracic segment muscle | 8.64e-12 | 1 |
chest organ | 8.64e-12 | 1 |
muscle of trunk | 8.64e-12 | 1 |
diaphragm | 8.64e-12 | 1 |
future diaphragm | 8.64e-12 | 1 |
musculoskeletal system | 2.79e-10 | 167 |
lateral plate mesoderm | 7.89e-07 | 203 |