FFCP PHASE1:Hg19::chr3:361434..361446,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10752 | |EntrezGene=10752 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1939 | |HGNC=1939 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000461289_5end | |association_with_transcript=-40bp_to_ENST00000461289_5end | ||
|cluster_id=chr3:361434..361446,+ | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_20_at_CHL1_5end | |description=CAGE_peak_20_at_CHL1_5end | ||
|id=chr3:361434..361446,+ | |id=chr3:361434..361446,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001871;1.64e-38;6!UBERON:0002771;3.61e-34;2!UBERON:0001950;3.84e-29;20!UBERON:0002619;1.01e-26;22!UBERON:0000956;8.76e-24;25!UBERON:0000203;8.76e-24;25!UBERON:0001893;1.08e-19;34!UBERON:0002791;1.59e-17;32!UBERON:0001869;1.59e-17;32!UBERON:0003528;7.14e-17;34!UBERON:0002020;7.14e-17;34!UBERON:0001872;1.71e-14;5!UBERON:0000200;2.19e-12;6!UBERON:0000073;1.41e-10;53!UBERON:0002616;1.41e-10;53!UBERON:0001017;1.11e-09;75!UBERON:0002780;2.85e-09;41!UBERON:0001890;2.85e-09;41!UBERON:0000955;3.02e-09;68!UBERON:0000922;4.08e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,1.49e-38,6;UBERON:0002771,3.61e-34,2;UBERON:0001950,3.84e-29,20;UBERON:0002619,1.01e-26,22;UBERON:0000956,8.76e-24,25;UBERON:0000203,8.76e-24,25;UBERON:0002791,5.33e-19,32;UBERON:0001869,5.33e-19,32;UBERON:0003528,5.55e-18,34;UBERON:0002020,5.55e-18,34;UBERON:0001893,5.55e-18,34;UBERON:0002780,3.52e-15,41;UBERON:0001890,3.52e-15,41;UBERON:0003080,3.52e-15,41;UBERON:0006240,3.52e-15,41;UBERON:0001872,1.83e-14,5;UBERON:0000200,2.19e-12,6;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0003056,1.22e-10,61;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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| ||
|short_description=p20@CHL1 | |short_description=p20@CHL1 | ||
}} | }} |
Latest revision as of 01:41, 18 September 2015
Short description: | p20@CHL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_CHL1_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -40bp_to_ENST00000461289_5end |
EntrezGene: | CHL1 |
HGNC: | 1939 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
temporal lobe | 1.49e-38 | 6 |
middle temporal gyrus | 3.61e-34 | 2 |
neocortex | 3.84e-29 | 20 |
regional part of cerebral cortex | 1.01e-26 | 22 |
cerebral cortex | 8.76e-24 | 25 |
pallium | 8.76e-24 | 25 |
regional part of telencephalon | 5.33e-19 | 32 |
cerebral hemisphere | 5.33e-19 | 32 |
brain grey matter | 5.55e-18 | 34 |
gray matter | 5.55e-18 | 34 |
telencephalon | 5.55e-18 | 34 |
regional part of forebrain | 3.52e-15 | 41 |
forebrain | 3.52e-15 | 41 |
anterior neural tube | 3.52e-15 | 41 |
future forebrain | 3.52e-15 | 41 |
parietal lobe | 1.83e-14 | 5 |
gyrus | 2.19e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
pre-chordal neural plate | 1.22e-10 | 61 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |