FFCP PHASE1:Hg19::chr19:7733929..7733950,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56729 | |EntrezGene=56729 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20389 | |HGNC=20389 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HD89 | |UniProt=Q9HD89 | ||
|association_with_transcript=-21bp_to_ENST00000221515,NM_001193374,NM_020415,uc002mhf.1,uc002mhg.1_5end | |association_with_transcript=-21bp_to_ENST00000221515,NM_001193374,NM_020415,uc002mhf.1,uc002mhg.1_5end | ||
|cluster_id=chr19:7733929..7733950,+ | |||
|coexpression_cluster_id=C386 | |||
|description=CAGE_peak_1_at_RETN_5end | |description=CAGE_peak_1_at_RETN_5end | ||
|id=chr19:7733929..7733950,+ | |id=chr19:7733929..7733950,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.25e-55!42;CL:0000860!2.04e-50!45;CL:0000037!8.81e-46!172;CL:0000566!8.81e-46!172;CL:0002194!3.22e-44!63;CL:0000576!3.22e-44!63;CL:0000040!3.22e-44!63;CL:0000559!3.22e-44!63;CL:0002032!1.77e-43!165;CL:0000837!1.77e-43!165;CL:0000763!8.22e-43!112;CL:0000049!8.22e-43!112;CL:0000766!2.59e-42!76;CL:0002009!2.59e-42!65;CL:0002087!4.83e-42!119;CL:0000988!1.29e-41!182;CL:0000839!1.28e-39!70;CL:0000557!4.58e-39!71;CL:0000738!1.46e-38!140;CL:0002031!2.41e-36!124;CL:0002393!3.64e-12!9;CL:0002397!3.64e-12!9;CL:0000134!1.94e-08!358;CL:0002320!7.53e-08!365 | |ontology_enrichment_celltype=CL:0002057!3.25e-55!42;CL:0000860!2.04e-50!45;CL:0000037!8.81e-46!172;CL:0000566!8.81e-46!172;CL:0002194!3.22e-44!63;CL:0000576!3.22e-44!63;CL:0000040!3.22e-44!63;CL:0000559!3.22e-44!63;CL:0002032!1.77e-43!165;CL:0000837!1.77e-43!165;CL:0000763!8.22e-43!112;CL:0000049!8.22e-43!112;CL:0000766!2.59e-42!76;CL:0002009!2.59e-42!65;CL:0002087!4.83e-42!119;CL:0000988!1.29e-41!182;CL:0000839!1.28e-39!70;CL:0000557!4.58e-39!71;CL:0000738!1.46e-38!140;CL:0002031!2.41e-36!124;CL:0002393!3.64e-12!9;CL:0002397!3.64e-12!9;CL:0000134!1.94e-08!358;CL:0002320!7.53e-08!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.89e-61;33!CL:0002057;1.89e-61;33!CL:0000473;9.39e-48;39!CL:0000234;9.39e-48;39!CL:0000576;1.34e-47;48!CL:0000766;5.16e-30;69!CL:0000763;6.49e-18;100!CL:0002087;6.03e-16;104!CL:0002393;4.40e-13;6!CL:0002397;4.40e-13;6!CL:0000738;9.02e-11;136!CL:0000988;2.18e-08;177!CL:0000767;6.17e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.27e-85,42;CL:0002057,9.27e-85,42;CL:0000473,2.12e-79,48;CL:0000234,2.12e-79,48;CL:0002194,1.78e-63,59;CL:0000576,1.78e-63,59;CL:0000040,1.78e-63,59;CL:0000559,1.78e-63,59;CL:0002009,5.66e-61,61;CL:0000766,6.99e-60,72;CL:0000557,5.63e-57,67;CL:0000839,2.25e-55,66;CL:0000763,3.51e-53,108;CL:0000049,3.51e-53,108;CL:0000037,1.76e-48,168;CL:0002087,1.47e-47,115;CL:0000988,4.79e-45,177;CL:0002032,7.57e-45,161;CL:0000837,7.57e-45,161;CL:0000738,2.12e-44,136;CL:0002031,1.23e-39,120;CL:0002393,6.19e-18,9;CL:0002397,6.19e-18,9;CL:0000134,3.27e-13,354;CL:0002320,1.30e-12,361;CL:0000219,1.63e-10,386;CL:0000048,5.28e-08,427;CL:0000034,1.14e-07,441;CL:0000723,1.16e-07,433;CL:0000767,6.11e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.33e-60;42!CL:0000049;6.17e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.84e-49!102;UBERON:0003061!8.84e-49!102;UBERON:0002193!3.94e-45!112;UBERON:0002371!3.50e-34!80;UBERON:0001474!1.51e-30!86;UBERON:0002405!4.67e-27!115;UBERON:0004765!2.05e-23!101;UBERON:0001434!2.05e-23!101;UBERON:0003081!5.80e-14!216;UBERON:0000178!4.62e-12!15;UBERON:0000179!4.62e-12!15;UBERON:0000463!4.62e-12!15;UBERON:0007023!9.12e-11!115;UBERON:0002204!3.82e-09!167;UBERON:0002384!4.60e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!8.84e-49!102;UBERON:0003061!8.84e-49!102;UBERON:0002193!3.94e-45!112;UBERON:0002371!3.50e-34!80;UBERON:0001474!1.51e-30!86;UBERON:0002405!4.67e-27!115;UBERON:0004765!2.05e-23!101;UBERON:0001434!2.05e-23!101;UBERON:0003081!5.80e-14!216;UBERON:0000178!4.62e-12!15;UBERON:0000179!4.62e-12!15;UBERON:0000463!4.62e-12!15;UBERON:0007023!9.12e-11!115;UBERON:0002204!3.82e-09!167;UBERON:0002384!4.60e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.09e-18;15!UBERON:0000179;2.09e-18;15!UBERON:0000463;2.09e-18;15!UBERON:0002390;4.72e-14;32!UBERON:0002193;5.78e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.91e-70,98;UBERON:0003061,3.91e-70,98;UBERON:0002193,3.26e-64,108;UBERON:0002371,7.63e-51,76;UBERON:0002405,4.62e-47,93;UBERON:0001474,3.96e-46,82;UBERON:0004765,8.11e-41,90;UBERON:0001434,2.24e-35,100;UBERON:0003081,3.29e-27,203;UBERON:0000178,1.72e-18,15;UBERON:0000179,1.72e-18,15;UBERON:0000463,1.72e-18,15;UBERON:0002204,8.25e-17,167;UBERON:0000926,6.98e-13,315;UBERON:0004120,6.98e-13,315;UBERON:0006603,6.98e-13,315;UBERON:0002384,8.54e-12,371 | |||
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|short_description=p1@RETN | |short_description=p1@RETN | ||
}} | }} |
Latest revision as of 21:16, 24 September 2015
Short description: | p1@RETN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RETN_5end |
Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
Association with transcript: | -21bp_to_ENST00000221515, NM_001193374, NM_020415, uc002mhf.1, uc002mhg.1_5end |
EntrezGene: | RETN |
HGNC: | 20389 |
UniProt: | Q9HD89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.91e-70 | 98 |
blood island | 3.91e-70 | 98 |
hemolymphoid system | 3.26e-64 | 108 |
bone marrow | 7.63e-51 | 76 |
immune system | 4.62e-47 | 93 |
bone element | 3.96e-46 | 82 |
skeletal element | 8.11e-41 | 90 |
skeletal system | 2.24e-35 | 100 |
lateral plate mesoderm | 3.29e-27 | 203 |
blood | 1.72e-18 | 15 |
haemolymphatic fluid | 1.72e-18 | 15 |
organism substance | 1.72e-18 | 15 |
musculoskeletal system | 8.25e-17 | 167 |
mesoderm | 6.98e-13 | 315 |
mesoderm-derived structure | 6.98e-13 | 315 |
presumptive mesoderm | 6.98e-13 | 315 |
connective tissue | 8.54e-12 | 371 |