FFCP PHASE1:Hg19::chr19:11649659..11649674,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1264 | |EntrezGene=1264 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2155 | |HGNC=2155 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z7E1 | |UniProt=B7Z7E1 | ||
|association_with_transcript=0bp_to_ENST00000535659_5end | |association_with_transcript=0bp_to_ENST00000535659_5end | ||
|cluster_id=chr19:11649659..11649674,+ | |||
|coexpression_cluster_id=C48 | |||
|description=CAGE_peak_1_at_CNN1_5end | |description=CAGE_peak_1_at_CNN1_5end | ||
|id=chr19:11649659..11649674,+ | |id=chr19:11649659..11649674,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.00e-15!180;CL:0000192!1.58e-11!42;CL:0000514!1.58e-11!42;CL:0000393!1.46e-10!60;CL:0000211!1.46e-10!60;CL:0000183!5.34e-10!59;CL:0000187!6.24e-10!54;CL:0000359!1.17e-09!32;CL:0000680!1.88e-08!57;CL:0000056!1.88e-08!57;CL:0000355!1.88e-08!57;CL:0000057!8.90e-07!75 | |ontology_enrichment_celltype=CL:0000055!4.00e-15!180;CL:0000192!1.58e-11!42;CL:0000514!1.58e-11!42;CL:0000393!1.46e-10!60;CL:0000211!1.46e-10!60;CL:0000183!5.34e-10!59;CL:0000187!6.24e-10!54;CL:0000359!1.17e-09!32;CL:0000680!1.88e-08!57;CL:0000056!1.88e-08!57;CL:0000355!1.88e-08!57;CL:0000057!8.90e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.01e-10;32!CL:0000192;4.44e-09;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.26e-12,43;CL:0000514,1.26e-12,43;CL:0000359,1.38e-10,32;CL:0000393,1.54e-10,61;CL:0000211,1.54e-10,61;CL:0000187,8.06e-10,55;CL:0000680,1.48e-08,58;CL:0000056,1.48e-08,58;CL:0000355,1.48e-08,58 | |||
|ontology_enrichment_development_v019=CL:0000514;4.44e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.75e-18!115;UBERON:0000475!4.67e-16!365;UBERON:0000468!1.79e-13!659;UBERON:0000481!3.00e-11!347;UBERON:0005256!7.89e-11!143;UBERON:0002385!1.04e-10!63;UBERON:0001015!1.04e-10!63;UBERON:0000383!1.04e-10!63;UBERON:0000467!6.12e-10!625;UBERON:0000480!9.39e-10!626;UBERON:0001134!1.06e-09!61;UBERON:0002036!1.06e-09!61;UBERON:0003082!1.06e-09!61;UBERON:0002100!2.52e-09!216;UBERON:0000062!3.00e-09!511;UBERON:0000119!9.58e-09!312;UBERON:0004111!1.02e-08!241;UBERON:0000025!1.27e-08!194;UBERON:0003103!1.58e-08!69;UBERON:0000483!2.06e-08!309;UBERON:0004872!2.21e-08!84;UBERON:0003914!2.53e-08!118;UBERON:0000477!2.66e-08!286;UBERON:0000914!3.02e-08!83;UBERON:0002329!3.02e-08!83;UBERON:0003077!3.02e-08!83;UBERON:0003059!3.02e-08!83;UBERON:0007282!3.02e-08!83;UBERON:0009618!3.02e-08!83;UBERON:0007285!3.02e-08!83;UBERON:0004290!3.07e-08!70;UBERON:0002553!4.15e-07!70;UBERON:0000922!6.63e-07!612;UBERON:0003886!9.08e-07!63;UBERON:0007100!9.59e-07!27 | |ontology_enrichment_uberon=UBERON:0007023!5.75e-18!115;UBERON:0000475!4.67e-16!365;UBERON:0000468!1.79e-13!659;UBERON:0000481!3.00e-11!347;UBERON:0005256!7.89e-11!143;UBERON:0002385!1.04e-10!63;UBERON:0001015!1.04e-10!63;UBERON:0000383!1.04e-10!63;UBERON:0000467!6.12e-10!625;UBERON:0000480!9.39e-10!626;UBERON:0001134!1.06e-09!61;UBERON:0002036!1.06e-09!61;UBERON:0003082!1.06e-09!61;UBERON:0002100!2.52e-09!216;UBERON:0000062!3.00e-09!511;UBERON:0000119!9.58e-09!312;UBERON:0004111!1.02e-08!241;UBERON:0000025!1.27e-08!194;UBERON:0003103!1.58e-08!69;UBERON:0000483!2.06e-08!309;UBERON:0004872!2.21e-08!84;UBERON:0003914!2.53e-08!118;UBERON:0000477!2.66e-08!286;UBERON:0000914!3.02e-08!83;UBERON:0002329!3.02e-08!83;UBERON:0003077!3.02e-08!83;UBERON:0003059!3.02e-08!83;UBERON:0007282!3.02e-08!83;UBERON:0009618!3.02e-08!83;UBERON:0007285!3.02e-08!83;UBERON:0004290!3.07e-08!70;UBERON:0002553!4.15e-07!70;UBERON:0000922!6.63e-07!612;UBERON:0003886!9.08e-07!63;UBERON:0007100!9.59e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0001135;3.25e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.80e-18,114;UBERON:0002385,5.43e-11,64;UBERON:0001015,5.43e-11,64;UBERON:0000383,5.43e-11,64;UBERON:0003104,1.06e-10,160;UBERON:0009142,1.06e-10,160;UBERON:0005256,2.83e-10,122;UBERON:0001134,6.58e-10,62;UBERON:0002036,6.58e-10,62;UBERON:0003082,6.58e-10,62;UBERON:0002100,3.20e-09,199;UBERON:0007503,1.07e-08,78;UBERON:0007524,1.58e-08,73;UBERON:0003077,2.82e-08,72;UBERON:0007285,2.82e-08,72;UBERON:0002329,4.64e-08,71;UBERON:0003059,4.64e-08,71;UBERON:0007282,4.64e-08,71;UBERON:0004290,4.64e-08,71;UBERON:0009618,4.64e-08,71;UBERON:0003103,8.21e-08,68;UBERON:0002553,1.05e-07,61;UBERON:0004111,1.18e-07,240;UBERON:0003914,1.40e-07,117;UBERON:0004872,2.58e-07,83;UBERON:0003886,3.33e-07,54;UBERON:0001135,3.48e-07,15;UBERON:0000025,7.01e-07,192 | |||
|phase1_expression=67.0393219508354,56.0943372594376,222.989867279826,225.164921294543,373.212513846785,247.744140844505,580.056721005431,5.68547886084148,0.261185628199839,38.8259619672384,4.18680700783456,1.96597234917155,18.4636884759917,0.247532705920093,0,131.775728704548,170.562551430785,219.823337206599,153.210898820219,7.38726348460727,4.69201589861782,18.8072832886853,19.7502831120429,11.6343261311952,30.0046908631579,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0.645484683583826,1.35426486594342,0,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0.217188844705117,7.87019353423379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,13.6812941172577,2.53007406669196,11.0294340339896,3.0417768981773,0,0,22.0266123992278,85.5875474205497,21.6951920662021,320.702266356149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0.488124115096339,0.367663080345869,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,176.922014803533,13.1695732131163,16.8159659632788,1.43418310374407,5.32002573297536,123.349072031308,181.473292740498,96.4470114311095,1.24484414159907,0.538842688278752,0.653847612453835,1.51357427644931,0.576175924479999,1.40592859100278,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0,4.75201142912821,30.6610992305411,1.82032272387605,1.43723628363248,0,0.125118519871964,0,40.8249187419179,46.586144961451,49.4283213802703,20.5312251519638,24.3969904536852,57.4469375921946,46.6250182551036,18.3055568611485,7.72893969288292,9.01741890159702,16.1921665008483,38.4810037510087,71.129013767675,77.244734918699,41.7906539836039,4.0411514204703,116.44314634545,139.743160241737,103.771082494018,0,0.272746120590835,0,19.3938192746057,11.7951493806122,16.9643156589497,23.3237373784583,26.9983310436922,6.93456982244077,12.5159625863853,6.43240938192885,1.38134921352481,0.928735856063958,0,0.118306800039844,0,0,0,0,0,0,0,0,0,43.4749498790682,76.9643401189718,192.58141191506,0,0,0,0.441463099414651,0,9.43622956641891,0.219500570817251,0,0,0,0,0,34.6395220860656,4.63721619900307,105.66782481224,0.144366447761074,0,0,0,0,0,0.234004265139238,0,1.87467667973554,1.6798212819886,0.567100388969546,0,0,0,6.40462209264727,0,0,0.432359860250884,0.75745460055828,0,0,0,0,0,0.300343057843917,0,3.81245686774226,9.59112151433216,3.30022286194275,27.5348754564067,0,2.535908257668,424.703172186038,179.932865856663,0.257207374262142,0,0.532844358032199,20.4458530931151,0,0,0.325736184293735,19.54655718084,0,20.1964382629923,186.508160140463,165.455300406304,0,0,0,98.4858156070405,103.375742250703,0,0,0,0,0,0,0,0,0.254094624222463,0,6.95959931499926,2.84777651068393,5.10351001322531,0,0,0,0.12269149171914,0,0.813795071099207,208.386803253869,27.1212062971686,53.6188211115378,50.9565155218302,21.0662269809403,6.82222512167955,7.24311499047534,75.7217182330398,104.537318563146,4.86548241021264,1.95801157462741,1.02943027143257,0,0,0,2.72814814301633,8.32177197552485,7.55975733324201,31.2615837851659,118.165719431808,82.5140677633236,51.5119380007918,157.605832712545,358.221682386814,89.0508398669946,5.85996836450091,6.03709866064632,2.7101961484557,2.59627214591811,1.85936605535935,0.120859449591622,0,0,23.9962196664028,26.2211281929673,31.7321084201806,2.70719767744447,3.61972084390749,18.0400446910677,1.46139224653261,5.27758144464378,1.13733384070897,0,3.23873874153209,7.71136263451447,17.0696255652627,51.172356933195,0,0.831076008928724,12.536986264442,0.219259876645935,0,1.53870075069834,4.26419039409617,8.78521665593618,27.6149911215896,8.05811290401422,1.07262349896764,1.14853107599234,0.650060246036521,67.487250534547,1.93341436584244,0.308097234229289,0.15350367472613,0.551346289938122,0.537101224341368,1.45016693914229,1.36362603865761,16.8270547372334,0,0,0,0,35.793107295891,19.8331778503303,9.0614845120878,1.23213432070436,12.7753447276085,10.4391959049009,57.2651837031113,18.6062352764589,6.69885064847401,37.6491515415284,36.982257621222,20.4718233049067,1.71175595213568,1.59101623962968,17.2688700843831,9.35336779433237,15.6486106949551,10.0140541993833,8.8960291892259,9.5106192703805,23.169215093144,20.4806170417628,3.1682753652067,12.6780176108107,25.9349831675173,3.11091950298168,3.39024349860728,24.8114404595756,4.64407282668854,7.0152141640602,7.52408194546694,1.9676842561399,162.734122324089,35.0100552852718,5.07052084558035,3.72869515730534,12.8706243727189,157.291933703231,9.57854872990614,0.844430541190656,1.31717957183961,0,0,0,1.34060455107157,0,26.8309832213821,0.86101074534246,0,0,0.459446800413919,0,0,0,0,0,0,0,0,17.5191476649056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69262196843137,0,0,0,0,59.482320784389,0.242721043499027,0,0,0.23874448473769,0.593929361665277,0.307160702099232,4.97073823883149,1.68803299692615,0.111308705022906,0,0,1212.22476051951,347.8414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| ||
|short_description=p1@CNN1 | |short_description=p1@CNN1 | ||
}} | }} |
Latest revision as of 05:43, 25 September 2015
Short description: | p1@CNN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CNN1_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 0bp_to_ENST00000535659_5end |
EntrezGene: | CNN1 |
HGNC: | 2155 |
UniProt: | B7Z7E1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.26e-12 | 43 |
smooth muscle myoblast | 1.26e-12 | 43 |
vascular associated smooth muscle cell | 1.38e-10 | 32 |
electrically responsive cell | 1.54e-10 | 61 |
electrically active cell | 1.54e-10 | 61 |
muscle cell | 8.06e-10 | 55 |
muscle precursor cell | 1.48e-08 | 58 |
myoblast | 1.48e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.48e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.80e-18 | 114 |
muscle tissue | 5.43e-11 | 64 |
musculature | 5.43e-11 | 64 |
musculature of body | 5.43e-11 | 64 |
mesenchyme | 1.06e-10 | 160 |
entire embryonic mesenchyme | 1.06e-10 | 160 |
trunk mesenchyme | 2.83e-10 | 122 |
skeletal muscle tissue | 6.58e-10 | 62 |
striated muscle tissue | 6.58e-10 | 62 |
myotome | 6.58e-10 | 62 |
trunk | 3.20e-09 | 199 |
epithelial vesicle | 1.07e-08 | 78 |
dense mesenchyme tissue | 1.58e-08 | 73 |
paraxial mesoderm | 2.82e-08 | 72 |
presumptive paraxial mesoderm | 2.82e-08 | 72 |
somite | 4.64e-08 | 71 |
presomitic mesoderm | 4.64e-08 | 71 |
presumptive segmental plate | 4.64e-08 | 71 |
dermomyotome | 4.64e-08 | 71 |
trunk paraxial mesoderm | 4.64e-08 | 71 |
compound organ | 8.21e-08 | 68 |
anatomical cavity | 1.05e-07 | 61 |
anatomical conduit | 1.18e-07 | 240 |
epithelial tube | 1.40e-07 | 117 |
splanchnic layer of lateral plate mesoderm | 2.58e-07 | 83 |
body cavity precursor | 3.33e-07 | 54 |
smooth muscle tissue | 3.48e-07 | 15 |
tube | 7.01e-07 | 192 |