FFCP PHASE1:Hg19::chr2:242255060..242255095,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3069 | |EntrezGene=3069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4857 | |HGNC=4857 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHN6,C9JKQ5,C9J5E5 | |UniProt=C9JHN6,C9JKQ5,C9J5E5 | ||
|association_with_transcript=0bp_to_ENST00000413241,ENST00000423693,ENST00000428482_5end | |association_with_transcript=0bp_to_ENST00000413241,ENST00000423693,ENST00000428482_5end | ||
|cluster_id=chr2:242255060..242255095,- | |||
|description=CAGE_peak_2_at_HDLBP_5end | |description=CAGE_peak_2_at_HDLBP_5end | ||
|id=chr2:242255060..242255095,- | |id=chr2:242255060..242255095,- | ||
|ontology_enrichment_celltype=CL:0000055!4.70e-14!180;CL:0000548!9.35e-11!679;CL:0000004!9.35e-11!679;CL:0000255!9.35e-11!679;CL:0000220!3.10e-10!246;CL:0002321!6.30e-10!248;CL:0000012!8.20e-10!682;CL:0000680!6.09e-09!57;CL:0000056!6.09e-09!57;CL:0000355!6.09e-09!57;CL:0000187!3.14e-08!54;CL:0000192!3.87e-08!42;CL:0000514!3.87e-08!42;CL:0000057!5.47e-08!75;CL:0000222!9.53e-08!119;CL:0000359!1.86e-07!32;CL:0000393!7.26e-07!60;CL:0000211!7.26e-07!60 | |ontology_enrichment_celltype=CL:0000055!4.70e-14!180;CL:0000548!9.35e-11!679;CL:0000004!9.35e-11!679;CL:0000255!9.35e-11!679;CL:0000220!3.10e-10!246;CL:0002321!6.30e-10!248;CL:0000012!8.20e-10!682;CL:0000680!6.09e-09!57;CL:0000056!6.09e-09!57;CL:0000355!6.09e-09!57;CL:0000187!3.14e-08!54;CL:0000192!3.87e-08!42;CL:0000514!3.87e-08!42;CL:0000057!5.47e-08!75;CL:0000222!9.53e-08!119;CL:0000359!1.86e-07!32;CL:0000393!7.26e-07!60;CL:0000211!7.26e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.91e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.08e-10,250;CL:0000680,9.58e-09,58;CL:0000056,9.58e-09,58;CL:0000355,9.58e-09,58;CL:0000057,3.55e-08,76;CL:0000187,4.86e-08,55;CL:0000192,6.57e-08,43;CL:0000514,6.57e-08,43;CL:0000222,1.38e-07,121;CL:0000359,1.86e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!3.40e-12!238;UBERON:0009142!3.40e-12!238;UBERON:0002100!1.58e-11!216;UBERON:0000914!2.73e-11!83;UBERON:0002329!2.73e-11!83;UBERON:0003077!2.73e-11!83;UBERON:0003059!2.73e-11!83;UBERON:0007282!2.73e-11!83;UBERON:0009618!2.73e-11!83;UBERON:0007285!2.73e-11!83;UBERON:0005256!1.92e-10!143;UBERON:0000490!3.39e-10!138;UBERON:0001134!4.66e-10!61;UBERON:0002036!4.66e-10!61;UBERON:0003082!4.66e-10!61;UBERON:0000486!7.61e-10!82;UBERON:0002385!1.24e-09!63;UBERON:0001015!1.24e-09!63;UBERON:0000383!1.24e-09!63;UBERON:0000926!1.69e-09!448;UBERON:0004120!1.69e-09!448;UBERON:0006603!1.69e-09!448;UBERON:0004290!2.27e-09!70;UBERON:0001637!6.93e-08!42;UBERON:0003509!6.93e-08!42;UBERON:0004572!6.93e-08!42;UBERON:0003102!6.97e-08!95;UBERON:0000468!1.08e-07!659;UBERON:0004119!6.67e-07!169;UBERON:0000925!6.67e-07!169;UBERON:0006595!6.67e-07!169;UBERON:0001007!9.30e-07!155;UBERON:0001555!9.30e-07!155;UBERON:0007026!9.30e-07!155 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.98e-10,199;UBERON:0000490,6.65e-10,148;UBERON:0001134,7.51e-10,62;UBERON:0002036,7.51e-10,62;UBERON:0003082,7.51e-10,62;UBERON:0000486,1.10e-09,83;UBERON:0002385,1.94e-09,64;UBERON:0001015,1.94e-09,64;UBERON:0000383,1.94e-09,64;UBERON:0002329,3.38e-09,71;UBERON:0003059,3.38e-09,71;UBERON:0007282,3.38e-09,71;UBERON:0004290,3.38e-09,71;UBERON:0009618,3.38e-09,71;UBERON:0005256,4.06e-09,122;UBERON:0003102,7.67e-09,99;UBERON:0003104,8.52e-09,160;UBERON:0009142,8.52e-09,160;UBERON:0003077,9.98e-09,72;UBERON:0007285,9.98e-09,72;UBERON:0007524,1.28e-08,73;UBERON:0001637,6.93e-08,42;UBERON:0003509,6.93e-08,42;UBERON:0004572,6.93e-08,42;UBERON:0007503,2.31e-07,78;UBERON:0004119,4.18e-07,160;UBERON:0000925,4.18e-07,160;UBERON:0006595,4.18e-07,160;UBERON:0001007,4.65e-07,145;UBERON:0001555,4.65e-07,145;UBERON:0007026,4.65e-07,145 | |||
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| ||
|short_description=p2@HDLBP | |short_description=p2@HDLBP | ||
}} | }} |
Latest revision as of 10:17, 16 September 2015
Short description: | p2@HDLBP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HDLBP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000413241, ENST00000423693, ENST00000428482_5end |
EntrezGene: | HDLBP |
HGNC: | 4857 |
UniProt: | C9JHN6C9JKQ5C9J5E5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.08e-10 | 250 |
muscle precursor cell | 9.58e-09 | 58 |
myoblast | 9.58e-09 | 58 |
multi-potent skeletal muscle stem cell | 9.58e-09 | 58 |
fibroblast | 3.55e-08 | 76 |
muscle cell | 4.86e-08 | 55 |
smooth muscle cell | 6.57e-08 | 43 |
smooth muscle myoblast | 6.57e-08 | 43 |
mesodermal cell | 1.38e-07 | 121 |
vascular associated smooth muscle cell | 1.86e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.98e-10 | 199 |
unilaminar epithelium | 6.65e-10 | 148 |
skeletal muscle tissue | 7.51e-10 | 62 |
striated muscle tissue | 7.51e-10 | 62 |
myotome | 7.51e-10 | 62 |
multilaminar epithelium | 1.10e-09 | 83 |
muscle tissue | 1.94e-09 | 64 |
musculature | 1.94e-09 | 64 |
musculature of body | 1.94e-09 | 64 |
somite | 3.38e-09 | 71 |
presomitic mesoderm | 3.38e-09 | 71 |
presumptive segmental plate | 3.38e-09 | 71 |
dermomyotome | 3.38e-09 | 71 |
trunk paraxial mesoderm | 3.38e-09 | 71 |
trunk mesenchyme | 4.06e-09 | 122 |
surface structure | 7.67e-09 | 99 |
mesenchyme | 8.52e-09 | 160 |
entire embryonic mesenchyme | 8.52e-09 | 160 |
paraxial mesoderm | 9.98e-09 | 72 |
presumptive paraxial mesoderm | 9.98e-09 | 72 |
dense mesenchyme tissue | 1.28e-08 | 73 |
artery | 6.93e-08 | 42 |
arterial blood vessel | 6.93e-08 | 42 |
arterial system | 6.93e-08 | 42 |
epithelial vesicle | 2.31e-07 | 78 |
endoderm-derived structure | 4.18e-07 | 160 |
endoderm | 4.18e-07 | 160 |
presumptive endoderm | 4.18e-07 | 160 |
digestive system | 4.65e-07 | 145 |
digestive tract | 4.65e-07 | 145 |
primitive gut | 4.65e-07 | 145 |