FFCP PHASE1:Hg19::chr2:234602305..234602330,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54578 | |EntrezGene=54578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12538 | |HGNC=12538 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000478062,ENST00000484784_5end | |association_with_transcript=0bp_to_ENST00000478062,ENST00000484784_5end | ||
|cluster_id=chr2:234602305..234602330,+ | |||
|coexpression_cluster_id=C1504 | |||
|description=CAGE_peak_6_at_UGT1A6_5end | |description=CAGE_peak_6_at_UGT1A6_5end | ||
|id=chr2:234602305..234602330,+ | |id=chr2:234602305..234602330,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.98e-10!254;CL:0000244!2.50e-09!4;CL:0000731!2.50e-09!4;CL:0000159!3.91e-08!2 | |ontology_enrichment_celltype=CL:0000066!6.98e-10!254;CL:0000244!2.50e-09!4;CL:0000731!2.50e-09!4;CL:0000159!3.91e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:1001319;5.05e-12;1!CL:1000600;5.05e-12;1!CL:0000244;3.41e-11;4!CL:0000731;3.41e-11;4!CL:0000182;1.66e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,5.05e-12,1;CL:1000600,5.05e-12,1;CL:0000244,3.78e-11,4;CL:0000731,3.78e-11,4;CL:0000066,1.26e-09,253;CL:0000182,1.77e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0009497;5.04e-08;13 | |||
|ontology_enrichment_disease=DOID:305!2.01e-13!106;DOID:0050687!1.54e-09!143;DOID:1749!3.07e-09!14;DOID:162!4.13e-07!235;DOID:14566!7.94e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:5662;5.93e-12;1!DOID:1749;3.12e-07;14!DOID:7;7.07e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.69e-15,106;DOID:0050687,1.89e-12,143;DOID:5662,5.62e-12,1;DOID:7,2.11e-09,39;DOID:1749,3.05e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000365!8.05e-13!5;UBERON:0005910!1.09e-10!6;UBERON:0006554!7.08e-10!44;UBERON:0001008!1.34e-09!45;UBERON:0001255!4.90e-09!2;UBERON:0001556!4.90e-09!2;UBERON:0004119!1.20e-08!169;UBERON:0000925!1.20e-08!169;UBERON:0006595!1.20e-08!169;UBERON:0005911!3.82e-08!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001255;7.84e-22;2!UBERON:0001556;7.84e-22;2!UBERON:0000365;2.98e-19;5!UBERON:0005910;3.75e-16;6!UBERON:0004645;5.05e-12;1!UBERON:0001256;5.05e-12;1!UBERON:0001259;5.05e-12;1!UBERON:0006554;5.08e-12;30!UBERON:0001008;5.08e-12;30!UBERON:0002423;1.43e-10;25!UBERON:0000486;2.35e-08;12!UBERON:0002294;4.40e-07;7!UBERON:0001173;4.40e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001255,6.01e-22,2;UBERON:0001556,6.01e-22,2;UBERON:0000365,3.38e-19,5;UBERON:0005910,4.16e-16,6;UBERON:0004645,5.05e-12,1;UBERON:0001256,5.05e-12,1;UBERON:0001259,5.05e-12,1;UBERON:0009497,1.49e-10,25;UBERON:0000015,1.49e-10,25;UBERON:0002423,1.49e-10,25;UBERON:0006235,1.49e-10,25;UBERON:0004161,1.49e-10,25;UBERON:0005911,2.91e-09,82;UBERON:0008835,6.08e-08,22;UBERON:0003894,6.08e-08,22;UBERON:0004119,1.24e-07,160;UBERON:0000925,1.24e-07,160;UBERON:0006595,1.24e-07,160;UBERON:0009854,1.33e-07,23;UBERON:0006554,1.55e-07,47;UBERON:0001008,2.28e-07,48;UBERON:0005177,2.79e-07,101;UBERON:0007499,5.25e-07,25;UBERON:0009856,9.65e-07,26 | |||
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| ||
|short_description=p6@UGT1A6 | |short_description=p6@UGT1A6 | ||
}} | }} |
Latest revision as of 23:35, 15 September 2015
Short description: | p6@UGT1A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_UGT1A6_5end |
Coexpression cluster: | C1504_signet_endometrial_bile_hepatoma_kidney_mesothelioma_liver |
Association with transcript: | 0bp_to_ENST00000478062, ENST00000484784_5end |
EntrezGene: | UGT1A6 |
HGNC: | 12538 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 5.05e-12 | 1 |
lower urinary tract cell | 5.05e-12 | 1 |
transitional epithelial cell | 3.78e-11 | 4 |
urothelial cell | 3.78e-11 | 4 |
epithelial cell | 1.26e-09 | 253 |
hepatocyte | 1.77e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
urinary bladder | 6.01e-22 | 2 |
lower urinary tract | 6.01e-22 | 2 |
urothelium | 3.38e-19 | 5 |
transitional epithelium | 4.16e-16 | 6 |
urinary bladder urothelium | 5.05e-12 | 1 |
wall of urinary bladder | 5.05e-12 | 1 |
mucosa of urinary bladder | 5.05e-12 | 1 |
epithelium of foregut-midgut junction | 1.49e-10 | 25 |
anatomical boundary | 1.49e-10 | 25 |
hepatobiliary system | 1.49e-10 | 25 |
foregut-midgut junction | 1.49e-10 | 25 |
septum transversum | 1.49e-10 | 25 |
endo-epithelium | 2.91e-09 | 82 |
hepatic diverticulum | 6.08e-08 | 22 |
liver primordium | 6.08e-08 | 22 |
endoderm-derived structure | 1.24e-07 | 160 |
endoderm | 1.24e-07 | 160 |
presumptive endoderm | 1.24e-07 | 160 |
digestive tract diverticulum | 1.33e-07 | 23 |
urinary system structure | 1.55e-07 | 47 |
renal system | 2.28e-07 | 48 |
trunk region element | 2.79e-07 | 101 |
epithelial sac | 5.25e-07 | 25 |
sac | 9.65e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.69e-15 | 106 |
cell type cancer | 1.89e-12 | 143 |
pleomorphic carcinoma | 5.62e-12 | 1 |
disease of anatomical entity | 2.11e-09 | 39 |
squamous cell carcinoma | 3.05e-07 | 14 |