FFCP PHASE1:Hg19::chr18:56887217..56887233,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2922 | |EntrezGene=2922 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4605 | |HGNC=4605 | ||
|TSSclassifier=strong | |||
|UniProt=P07492 | |UniProt=P07492 | ||
|association_with_transcript=-166bp_to_ENST00000256857,NM_001012512,NM_001012513,NM_002091,uc002lhu.2,uc002lhv.2,uc002lhw.2_5end | |association_with_transcript=-166bp_to_ENST00000256857,NM_001012512,NM_001012513,NM_002091,uc002lhu.2,uc002lhv.2,uc002lhw.2_5end | ||
|cluster_id=chr18:56887217..56887233,+ | |||
|description=CAGE_peak_3_at_GRP_5end | |description=CAGE_peak_3_at_GRP_5end | ||
|id=chr18:56887217..56887233,+ | |id=chr18:56887217..56887233,+ | ||
|ontology_enrichment_celltype=CL:0002322!4.14e-16!5;CL:0002553!1.65e-10!1;CL:0000148!2.53e-08!10;CL:0000541!2.53e-08!10 | |ontology_enrichment_celltype=CL:0002322!4.14e-16!5;CL:0002553!1.65e-10!1;CL:0000148!2.53e-08!10;CL:0000541!2.53e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0002553;1.07e-23;1!CL:0000333;1.93e-18;5!CL:0002321;8.83e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.07e-23,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.30e-08;3 | |||
|ontology_enrichment_disease=DOID:171!2.76e-14!10;DOID:169!7.69e-07!6 | |ontology_enrichment_disease=DOID:171!2.76e-14!10;DOID:169!7.69e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:169;1.52e-15;6!DOID:3193;2.90e-12;2!DOID:962;2.90e-12;2!DOID:171;1.01e-09;10!DOID:1192;1.30e-08;3!DOID:1324;6.59e-07;15!DOID:5409;7.27e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.63e-15,6;DOID:3193,3.24e-12,2;DOID:962,3.24e-12,2;DOID:171,1.05e-09,10;DOID:1192,1.40e-08,3;DOID:1324,6.79e-07,15;DOID:5409,7.70e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!3.75e-19!2;UBERON:0002757!3.75e-19!2;UBERON:0010134!3.75e-19!2;UBERON:0002784!3.75e-19!2;UBERON:0005408!3.75e-19!2;UBERON:0001899!3.75e-19!2;UBERON:0002360!5.82e-18!2;UBERON:0000094!5.82e-18!2;UBERON:0007645!5.82e-18!2;UBERON:0003296!4.86e-10!4;UBERON:0010133!4.86e-10!4;UBERON:0002022!6.91e-10!1;UBERON:0002363!1.07e-09!1;UBERON:0007647!1.07e-09!1;UBERON:0010115!1.07e-09!1;UBERON:0000013!4.78e-08!5;UBERON:0002410!4.78e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.99e-45;2!UBERON:0002757;3.99e-45;2!UBERON:0010134;3.99e-45;2!UBERON:0005408;3.99e-45;2!UBERON:0001899;3.99e-45;2!UBERON:0003296;3.68e-23;4!UBERON:0010133;3.68e-23;4!UBERON:0002784;3.68e-23;4!UBERON:0000013;1.93e-18;5!UBERON:0002410;1.93e-18;5!UBERON:0001894;1.08e-13;7!UBERON:0003714;2.90e-12;2!UBERON:0000010;1.07e-10;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.19e-45,2;UBERON:0002757,3.19e-45,2;UBERON:0010134,3.19e-45,2;UBERON:0005408,3.19e-45,2;UBERON:0001899,3.19e-45,2;UBERON:0003296,3.29e-23,4;UBERON:0010133,3.29e-23,4;UBERON:0002784,3.29e-23,4;UBERON:0000013,2.11e-18,5;UBERON:0002410,2.11e-18,5;UBERON:0001894,1.02e-13,7;UBERON:0006222,1.02e-13,7;UBERON:0003714,3.24e-12,2;UBERON:0000010,1.12e-10,8 | |||
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|short_description=p3@GRP | |short_description=p3@GRP | ||
}} | }} |
Latest revision as of 01:13, 20 September 2015
Short description: | p3@GRP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRP_5end |
Coexpression cluster: | NA |
Association with transcript: | -166bp_to_ENST00000256857, NM_001012512, NM_001012513, NM_002091, uc002lhu.2, uc002lhv.2, uc002lhw.2_5end |
EntrezGene: | GRP |
HGNC: | 4605 |
UniProt: | P07492 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.07e-23 | 1 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.19e-45 | 2 |
regional part of epithalamus | 3.19e-45 | 2 |
secretory circumventricular organ | 3.19e-45 | 2 |
circumventricular organ | 3.19e-45 | 2 |
epithalamus | 3.19e-45 | 2 |
gland of diencephalon | 3.29e-23 | 4 |
neuroendocrine gland | 3.29e-23 | 4 |
regional part of diencephalon | 3.29e-23 | 4 |
sympathetic nervous system | 2.11e-18 | 5 |
autonomic nervous system | 2.11e-18 | 5 |
diencephalon | 1.02e-13 | 7 |
future diencephalon | 1.02e-13 | 7 |
neural tissue | 3.24e-12 | 2 |
peripheral nervous system | 1.12e-10 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.63e-15 | 6 |
peripheral nerve sheath neoplasm | 3.24e-12 | 2 |
neurofibroma | 3.24e-12 | 2 |
neuroectodermal tumor | 1.05e-09 | 10 |
peripheral nervous system neoplasm | 1.40e-08 | 3 |
lung cancer | 6.79e-07 | 15 |
lung small cell carcinoma | 7.70e-07 | 4 |