FFCP PHASE1:Hg19::chr2:174830084..174830108,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6670 | |EntrezGene=6670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11208 | |HGNC=11208 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_uc002uig.2,uc010zel.1_5end | |association_with_transcript=-21bp_to_uc002uig.2,uc010zel.1_5end | ||
|cluster_id=chr2:174830084..174830108,- | |||
|description=CAGE_peak_4_at_SP3_5end | |description=CAGE_peak_4_at_SP3_5end | ||
|id=chr2:174830084..174830108,- | |id=chr2:174830084..174830108,- | ||
|ontology_enrichment_celltype=CL:0000542!1.83e-13!53;CL:0000051!1.83e-13!53;CL:0000838!6.25e-13!52;CL:0000945!1.53e-10!24;CL:0000826!1.53e-10!24;CL:0002087!1.69e-10!119;CL:0000037!1.10e-08!172;CL:0000566!1.10e-08!172;CL:0002031!2.01e-08!124;CL:0002032!2.07e-08!165;CL:0000837!2.07e-08!165;CL:0000988!4.15e-08!182;CL:0000738!4.37e-08!140;CL:0000236!9.45e-07!14 | |ontology_enrichment_celltype=CL:0000542!1.83e-13!53;CL:0000051!1.83e-13!53;CL:0000838!6.25e-13!52;CL:0000945!1.53e-10!24;CL:0000826!1.53e-10!24;CL:0002087!1.69e-10!119;CL:0000037!1.10e-08!172;CL:0000566!1.10e-08!172;CL:0002031!2.01e-08!124;CL:0002032!2.07e-08!165;CL:0000837!2.07e-08!165;CL:0000988!4.15e-08!182;CL:0000738!4.37e-08!140;CL:0000236!9.45e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000945;9.24e-11;24!CL:0000542;1.16e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.69e-13,53;CL:0000051,1.69e-13,53;CL:0000838,5.81e-13,52;CL:0000945,1.45e-10,24;CL:0000826,1.45e-10,24;CL:0002087,1.66e-10,115;CL:0000037,1.14e-08,168;CL:0002032,2.07e-08,161;CL:0000837,2.07e-08,161;CL:0002031,2.13e-08,120;CL:0000988,4.29e-08,177;CL:0000738,4.55e-08,136;CL:0000236,9.14e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.16e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.12e-15!115;UBERON:0000073!2.83e-10!94;UBERON:0001016!2.83e-10!94;UBERON:0001049!7.40e-10!57;UBERON:0005068!7.40e-10!57;UBERON:0006241!7.40e-10!57;UBERON:0007135!7.40e-10!57;UBERON:0001017!1.35e-09!82;UBERON:0005743!5.56e-09!86;UBERON:0003080!6.86e-08!42;UBERON:0002780!1.97e-07!41;UBERON:0001890!1.97e-07!41;UBERON:0006240!1.97e-07!41;UBERON:0000955!2.74e-07!69;UBERON:0006238!2.74e-07!69;UBERON:0000178!4.06e-07!15;UBERON:0000179!4.06e-07!15;UBERON:0000463!4.06e-07!15;UBERON:0001893!5.09e-07!34;UBERON:0002020!5.38e-07!34;UBERON:0003528!5.38e-07!34;UBERON:0002791!6.29e-07!33;UBERON:0001869!6.40e-07!32;UBERON:0002616!7.98e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.46e-07;49!UBERON:0000178;4.26e-07;15!UBERON:0000179;4.26e-07;15!UBERON:0000463;4.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.01e-15,114;UBERON:0001016,2.52e-10,89;UBERON:0001049,2.39e-09,56;UBERON:0005068,2.39e-09,56;UBERON:0006241,2.39e-09,56;UBERON:0007135,2.39e-09,56;UBERON:0001017,5.05e-09,81;UBERON:0000073,1.66e-08,53;UBERON:0002616,1.66e-08,53;UBERON:0002780,1.89e-07,41;UBERON:0001890,1.89e-07,41;UBERON:0003080,1.89e-07,41;UBERON:0006240,1.89e-07,41;UBERON:0000178,3.92e-07,15;UBERON:0000179,3.92e-07,15;UBERON:0000463,3.92e-07,15;UBERON:0001893,4.92e-07,34;UBERON:0003528,5.19e-07,34;UBERON:0002020,5.19e-07,34;UBERON:0001869,6.18e-07,32;UBERON:0002791,7.48e-07,32;UBERON:0000955,9.37e-07,68;UBERON:0006238,9.37e-07,68 | |||
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| ||
|short_description=p4@SP3 | |short_description=p4@SP3 | ||
}} | }} |
Latest revision as of 06:42, 18 September 2015
Short description: | p4@SP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SP3_5end |
Coexpression cluster: | NA |
Association with transcript: | -21bp_to_uc002uig.2, uc010zel.1_5end |
EntrezGene: | SP3 |
HGNC: | 11208 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.69e-13 | 53 |
common lymphoid progenitor | 1.69e-13 | 53 |
lymphoid lineage restricted progenitor cell | 5.81e-13 | 52 |
lymphocyte of B lineage | 1.45e-10 | 24 |
pro-B cell | 1.45e-10 | 24 |
nongranular leukocyte | 1.66e-10 | 115 |
hematopoietic stem cell | 1.14e-08 | 168 |
hematopoietic oligopotent progenitor cell | 2.07e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-08 | 161 |
hematopoietic lineage restricted progenitor cell | 2.13e-08 | 120 |
hematopoietic cell | 4.29e-08 | 177 |
leukocyte | 4.55e-08 | 136 |
B cell | 9.14e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.01e-15 | 114 |
nervous system | 2.52e-10 | 89 |
neural tube | 2.39e-09 | 56 |
neural rod | 2.39e-09 | 56 |
future spinal cord | 2.39e-09 | 56 |
neural keel | 2.39e-09 | 56 |
central nervous system | 5.05e-09 | 81 |
regional part of nervous system | 1.66e-08 | 53 |
regional part of brain | 1.66e-08 | 53 |
regional part of forebrain | 1.89e-07 | 41 |
forebrain | 1.89e-07 | 41 |
anterior neural tube | 1.89e-07 | 41 |
future forebrain | 1.89e-07 | 41 |
blood | 3.92e-07 | 15 |
haemolymphatic fluid | 3.92e-07 | 15 |
organism substance | 3.92e-07 | 15 |
telencephalon | 4.92e-07 | 34 |
brain grey matter | 5.19e-07 | 34 |
gray matter | 5.19e-07 | 34 |
cerebral hemisphere | 6.18e-07 | 32 |
regional part of telencephalon | 7.48e-07 | 32 |
brain | 9.37e-07 | 68 |
future brain | 9.37e-07 | 68 |