FFCP PHASE1:Hg19::chr11:85779786..85779859,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:85779786..85779859,-
|short_description=p5@PICALM
|description=CAGE_peak_5_at_PICALM_5end
|association_with_transcript=0bp_to_ENST00000356360,ENST00000534...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8301 | |EntrezGene=8301 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15514 | |HGNC=15514 | ||
|TSSclassifier=strong | |||
|UniProt=E9PJT1 | |UniProt=E9PJT1 | ||
|association_with_transcript=0bp_to_ENST00000356360,ENST00000534412_5end | |||
|cluster_id=chr11:85779786..85779859,- | |||
|description=CAGE_peak_5_at_PICALM_5end | |||
|id=chr11:85779786..85779859,- | |||
|ontology_enrichment_celltype=CL:0000766!1.66e-20!76;CL:0000860!1.92e-19!45;CL:0000839!1.06e-18!70;CL:0002057!3.44e-18!42;CL:0002009!4.75e-18!65;CL:0002194!1.22e-17!63;CL:0000576!1.22e-17!63;CL:0000040!1.22e-17!63;CL:0000559!1.22e-17!63;CL:0000557!1.53e-17!71;CL:0000763!2.48e-16!112;CL:0000049!2.48e-16!112;CL:0000359!1.51e-07!32;CL:0000048!5.59e-07!430;CL:0000738!8.90e-07!140;CL:0000723!9.84e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.83e-19;33!CL:0002057;8.83e-19;33!CL:0000473;8.88e-15;39!CL:0000234;8.88e-15;39!CL:0000576;1.86e-11;48!CL:0000766;1.25e-10;69!CL:0000359;6.97e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.56e-22,72;CL:0000860,7.97e-22,42;CL:0002057,7.97e-22,42;CL:0000473,8.93e-21,48;CL:0000234,8.93e-21,48;CL:0000839,2.55e-19,66;CL:0002009,6.67e-19,61;CL:0002194,2.10e-18,59;CL:0000576,2.10e-18,59;CL:0000040,2.10e-18,59;CL:0000559,2.10e-18,59;CL:0000557,2.17e-18,67;CL:0000763,2.35e-18,108;CL:0000049,2.35e-18,108;CL:0000048,4.71e-09,427;CL:0000723,5.02e-09,433;CL:0000034,2.37e-08,441;CL:0000134,8.34e-08,354;CL:0002032,1.40e-07,161;CL:0000837,1.40e-07,161;CL:0000738,2.83e-07,136;CL:0000037,3.36e-07,168;CL:0000359,4.55e-07,32;CL:0002320,6.98e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;7.11e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.36e-14!80;UBERON:0002390!5.68e-14!102;UBERON:0003061!5.68e-14!102;UBERON:0001474!6.01e-14!86;UBERON:0002193!1.02e-13!112;UBERON:0003081!1.18e-10!216;UBERON:0002204!2.75e-10!167;UBERON:0004765!8.58e-10!101;UBERON:0001434!8.58e-10!101;UBERON:0002405!1.68e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.53e-15,82;UBERON:0002371,6.34e-15,76;UBERON:0002390,7.52e-15,98;UBERON:0003061,7.52e-15,98;UBERON:0002193,3.02e-14,108;UBERON:0003081,2.69e-13,203;UBERON:0002405,1.20e-12,93;UBERON:0004765,2.12e-12,90;UBERON:0002204,4.75e-11,167;UBERON:0001434,2.12e-10,100;UBERON:0000926,1.79e-07,315;UBERON:0004120,1.79e-07,315;UBERON:0006603,1.79e-07,315;UBERON:0002384,3.94e-07,371 | |||
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| ||
|short_description=p5@PICALM | |||
}} | }} |
Latest revision as of 21:42, 24 September 2015
Short description: | p5@PICALM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PICALM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000356360, ENST00000534412_5end |
EntrezGene: | PICALM |
HGNC: | 15514 |
UniProt: | E9PJT1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.56e-22 | 72 |
classical monocyte | 7.97e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.97e-22 | 42 |
defensive cell | 8.93e-21 | 48 |
phagocyte | 8.93e-21 | 48 |
myeloid lineage restricted progenitor cell | 2.55e-19 | 66 |
macrophage dendritic cell progenitor | 6.67e-19 | 61 |
monopoietic cell | 2.10e-18 | 59 |
monocyte | 2.10e-18 | 59 |
monoblast | 2.10e-18 | 59 |
promonocyte | 2.10e-18 | 59 |
granulocyte monocyte progenitor cell | 2.17e-18 | 67 |
myeloid cell | 2.35e-18 | 108 |
common myeloid progenitor | 2.35e-18 | 108 |
multi fate stem cell | 4.71e-09 | 427 |
somatic stem cell | 5.02e-09 | 433 |
stem cell | 2.37e-08 | 441 |
mesenchymal cell | 8.34e-08 | 354 |
hematopoietic oligopotent progenitor cell | 1.40e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-07 | 161 |
leukocyte | 2.83e-07 | 136 |
hematopoietic stem cell | 3.36e-07 | 168 |
vascular associated smooth muscle cell | 4.55e-07 | 32 |
connective tissue cell | 6.98e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.53e-15 | 82 |
bone marrow | 6.34e-15 | 76 |
hematopoietic system | 7.52e-15 | 98 |
blood island | 7.52e-15 | 98 |
hemolymphoid system | 3.02e-14 | 108 |
lateral plate mesoderm | 2.69e-13 | 203 |
immune system | 1.20e-12 | 93 |
skeletal element | 2.12e-12 | 90 |
musculoskeletal system | 4.75e-11 | 167 |
skeletal system | 2.12e-10 | 100 |
mesoderm | 1.79e-07 | 315 |
mesoderm-derived structure | 1.79e-07 | 315 |
presumptive mesoderm | 1.79e-07 | 315 |
connective tissue | 3.94e-07 | 371 |