FFCP PHASE1:Hg19::chr22:42017790..42017808,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2547 | |EntrezGene=2547 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4055 | |HGNC=4055 | ||
|TSSclassifier=strong | |||
|UniProt=B1AHC7 | |UniProt=B1AHC7 | ||
|association_with_transcript=-177bp_to_ENST00000402409_5end | |association_with_transcript=-177bp_to_ENST00000402409_5end | ||
|cluster_id=chr22:42017790..42017808,+ | |||
|description=CAGE_peak_4_at_XRCC6_5end | |description=CAGE_peak_4_at_XRCC6_5end | ||
|id=chr22:42017790..42017808,+ | |id=chr22:42017790..42017808,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.58e-13!180;CL:0000548!5.24e-10!679;CL:0000004!5.24e-10!679;CL:0000255!5.24e-10!679;CL:0000012!1.45e-09!682;CL:0002321!9.41e-07!248 | |ontology_enrichment_celltype=CL:0000055!6.58e-13!180;CL:0000548!5.24e-10!679;CL:0000004!5.24e-10!679;CL:0000255!5.24e-10!679;CL:0000012!1.45e-09!682;CL:0002321!9.41e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.83e-12;32!CL:0002595;5.50e-11;5!CL:0002596;6.41e-08;2!CL:0002593;1.75e-07;2!CL:0000192;3.67e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,7.72e-13,32;CL:0002595,4.21e-11,5;CL:0000192,7.19e-09,43;CL:0000514,7.19e-09,43;CL:0000680,3.03e-08,58;CL:0000056,3.03e-08,58;CL:0000355,3.03e-08,58;CL:0002596,5.48e-08,2;CL:0002593,1.41e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;3.67e-07;43 | |||
|ontology_enrichment_disease=DOID:14566!2.97e-08!239;DOID:162!1.97e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:0060084;7.93e-11;3!DOID:127;7.93e-11;3!DOID:0060072;3.22e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.31e-11,3;DOID:127,2.31e-11,3;DOID:0060072,1.30e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001637!7.27e-07!42;UBERON:0003509!7.27e-07!42;UBERON:0004572!7.27e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;5.50e-11;5!UBERON:0001533;5.50e-11;5!UBERON:0005396;6.41e-08;2!UBERON:0003513;7.52e-08;7!UBERON:0002456;1.75e-07;2!UBERON:0001637;3.36e-07;42!UBERON:0003509;3.36e-07;42!UBERON:0004572;3.36e-07;42!UBERON:0004573;6.18e-07;33!UBERON:0004571;6.18e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,4.21e-11,5;UBERON:0001533,4.21e-11,5;UBERON:0001637,7.14e-11,42;UBERON:0003509,7.14e-11,42;UBERON:0004572,7.14e-11,42;UBERON:0004573,1.75e-08,33;UBERON:0004571,1.75e-08,33;UBERON:0007500,3.84e-08,59;UBERON:0001981,3.84e-08,59;UBERON:0004537,3.84e-08,59;UBERON:0006965,3.84e-08,59;UBERON:0005396,5.48e-08,2;UBERON:0003513,6.24e-08,7;UBERON:0002456,1.41e-07,2;UBERON:0001134,1.63e-07,62;UBERON:0002036,1.63e-07,62;UBERON:0003082,1.63e-07,62;UBERON:0002385,3.47e-07,64;UBERON:0001015,3.47e-07,64;UBERON:0000383,3.47e-07,64 | |||
|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,0.631719873426831,0,0.737201809504527,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0.154934401160603,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,1.00267582127178,0.289693037921647,1.5905718941022,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.458426764241994,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,1.67799774483962,0.275118041940067,0,0,0,0.33472061276467,0.402829317109147,1.52054421143703,0,0,0.81014194788176,0.535798369704479,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.506522046658319,0.662045904066094,0,0.354668382198357,0,0,0.49333509683432,0,0.538842688278752,0.490385709340376,0.151357427644931,0,0,0,0,0,0.23486899728753,0.485618833104395,0.421352420106746,0.204154171254893,0.245668634623536,0,0,0,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.877955241761676,0,0,0.226864366320042,0.358779271377724,0,0,0.300091096084402,0.515262646192195,0,0.18611685633159,1.18143432568886,0.292311015483596,0.252433774244115,0.368199594569197,0.323292113637624,0,0.604512589365842,0.67824236924195,0.57978255948989,0.545492241181669,0,0.121973706129595,0.795178609928912,0.232387885739037,0.621966330092223,1.00928340350251,1.09493207722749,0,0,0,0,0,0.709840800239063,1.18009283054671,0.482022059766964,0.992645754591546,1.08939722046203,0.237270619111097,0.808987848960987,1.17732879075208,0.38474715694639,0,0,0,0,0,0,0,0,0,0.857839051492628,0.768251997860379,1.1240175325762,0,0,0,0,1.44331342025273,0,0.587043471179108,0.144366447761074,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0.850650583454319,0.179117045405697,0,0.383382679165211,0,0,0.207328115540772,0,0,0.063497894292169,0,1.17217447210047,0,0,0.600686115687835,0,0.112131084345361,0,0.36669142910475,0.775630294546667,0,0.845302752556,0.26593811658487,0,0.257207374262142,1.41849132023278,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0,0.791951872933429,0.602878754119172,0.871533458600294,0.099972991182057,0,0,0,1.19812427745791,0,0,1.59259437334337,0.61642896765115,1.07436577943937,0,0,0.215627574859517,0.128343036279748,1.01637849688985,0,0.773288812777695,0,0,0,0,0,0,0,0,0.415941723061614,0.892144943985809,0.157702415033935,0.117141414992713,0.300946099727719,0,1.03473071292505,0,0.737476674166813,0.347534457872331,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0.841980283299221,0.512556597022804,0.511707249066704,1.28683136914886,0,0.616838775210622,0.710246901252508,0.9033987161519,0,0.464841513839837,0.362578348774867,1.00253235151642,0,0.803701137152247,0.364182336013434,0.393373244878272,0,0.15403067420883,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0,0.261435451024901,0.512900250232778,0,0,0,0.183138929636687,0.41254749960294,0,0.650060246036521,0,0,0.462145851343933,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0.445160178233687,0,0,0,0,0.464845549297286,0.62962469366128,1.3940745403212,0.308033580176089,2.12922412126809,0,1.66791797193528,0.858749320451947,0,0,0.38126038784765,0,0,1.27281299170375,2.35484592059769,0,0.274537029736055,0.235624804691373,2.22400729730648,0,0,0,1.94970791705028,1.05650146756755,0,0.282810863907425,0,2.2054613741845,0.66343897524122,1.31535265576129,0.578775534266688,0,1.21746226177622,0.30982349809975,0.845086807596724,0,0.0982490410131212,1.78335525740625,0.709522128141196,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,1.38871292465715,0,0.245040215981032,0.185803175125719,0,0.0711418433484141,1.75368900001705,0.798317485731266,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0.321176150207399,0,0,0,0.307240764308458,0,0,0.19538809540204,0.278406173895242,0,0.540911356951966,0.33307196799782,0,0,0,0.242721043499027,0,0.284136146806413,0,0.296964680832639,0,0,0,0.111308705022906,0.494411622680279,0,0,0,0.503865495708552,0.306806047506464,0.123084805461069,1.24415835064723,0.449341755736634,0.716084698702437,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.910347586283997,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0.21787692703798,0,0,0,0,0.179515288819544,0.651884231532048,0,0.457987967009312,0,2.04386596391473,0.31396051279005,0,0,0,0.167821586975843,0.189753732724185,0.158936578980379,0,0,2.26164914294305,0,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0,0.182454789215666,0,0.971121518136371,0,0,0.30607276163049,0,3.45743864653333,1.24425829676697,0,0,0,0,0,0.138674673013139,0.520679215005393,0.0979923974143777,0.435296032902013,0,0,0.387025325156341,0.14617863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| ||
|short_description=p4@XRCC6 | |short_description=p4@XRCC6 | ||
}} | }} |
Latest revision as of 22:10, 24 September 2015
Short description: | p4@XRCC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_XRCC6_5end |
Coexpression cluster: | NA |
Association with transcript: | -177bp_to_ENST00000402409_5end |
EntrezGene: | XRCC6 |
HGNC: | 4055 |
UniProt: | B1AHC7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 7.72e-13 | 32 |
smooth muscle cell of the subclavian artery | 4.21e-11 | 5 |
smooth muscle cell | 7.19e-09 | 43 |
smooth muscle myoblast | 7.19e-09 | 43 |
muscle precursor cell | 3.03e-08 | 58 |
myoblast | 3.03e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.03e-08 | 58 |
smooth muscle cell of the carotid artery | 5.48e-08 | 2 |
smooth muscle cell of the internal thoracic artery | 1.41e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 4.21e-11 | 5 |
subclavian artery | 4.21e-11 | 5 |
artery | 7.14e-11 | 42 |
arterial blood vessel | 7.14e-11 | 42 |
arterial system | 7.14e-11 | 42 |
systemic artery | 1.75e-08 | 33 |
systemic arterial system | 1.75e-08 | 33 |
epithelial tube open at both ends | 3.84e-08 | 59 |
blood vessel | 3.84e-08 | 59 |
blood vasculature | 3.84e-08 | 59 |
vascular cord | 3.84e-08 | 59 |
carotid artery segment | 5.48e-08 | 2 |
trunk blood vessel | 6.24e-08 | 7 |
internal thoracic artery | 1.41e-07 | 2 |
skeletal muscle tissue | 1.63e-07 | 62 |
striated muscle tissue | 1.63e-07 | 62 |
myotome | 1.63e-07 | 62 |
muscle tissue | 3.47e-07 | 64 |
musculature | 3.47e-07 | 64 |
musculature of body | 3.47e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.31e-11 | 3 |
leiomyoma | 2.31e-11 | 3 |
benign neoplasm | 1.30e-08 | 4 |