FFCP PHASE1:Hg19::chr17:4872349..4872405,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:4872349..4872405,- | |||
|coexpression_cluster_id=C2420 | |||
|description=CAGE_peak_at_chr17:4872349..4872405,- | |description=CAGE_peak_at_chr17:4872349..4872405,- | ||
|id=chr17:4872349..4872405,- | |id=chr17:4872349..4872405,- | ||
|ontology_enrichment_celltype=CL:0000055!6.59e-36!180;CL:0000057!5.30e-19!75;CL:0000548!1.31e-17!679;CL:0000004!1.31e-17!679;CL:0000255!1.31e-17!679;CL:0000012!1.04e-16!682;CL:0000144!2.64e-13!625;CL:0000220!9.12e-13!246;CL:0002371!1.15e-12!591;CL:0002321!1.27e-12!248;CL:0000680!3.64e-11!57;CL:0000056!3.64e-11!57;CL:0000355!3.64e-11!57;CL:0000183!8.31e-11!59;CL:0000187!8.80e-11!54;CL:0000393!4.27e-10!60;CL:0000211!4.27e-10!60;CL:0000003!2.42e-09!722;CL:0000192!2.49e-08!42;CL:0000514!2.49e-08!42;CL:0002334!1.02e-07!12;CL:0000359!8.69e-07!32;CL:0000075!9.90e-07!27 | |ontology_enrichment_celltype=CL:0000055!6.59e-36!180;CL:0000057!5.30e-19!75;CL:0000548!1.31e-17!679;CL:0000004!1.31e-17!679;CL:0000255!1.31e-17!679;CL:0000012!1.04e-16!682;CL:0000144!2.64e-13!625;CL:0000220!9.12e-13!246;CL:0002371!1.15e-12!591;CL:0002321!1.27e-12!248;CL:0000680!3.64e-11!57;CL:0000056!3.64e-11!57;CL:0000355!3.64e-11!57;CL:0000183!8.31e-11!59;CL:0000187!8.80e-11!54;CL:0000393!4.27e-10!60;CL:0000211!4.27e-10!60;CL:0000003!2.42e-09!722;CL:0000192!2.49e-08!42;CL:0000514!2.49e-08!42;CL:0002334!1.02e-07!12;CL:0000359!8.69e-07!32;CL:0000075!9.90e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.48e-09;55!CL:0000723;3.42e-09;61!CL:0000048;8.78e-09;58!CL:0002334;2.34e-08;12!CL:0000057;1.99e-07;73!CL:0002320;3.81e-07;188!CL:0000034;6.34e-07;69!CL:0000075;7.10e-07;27!CL:0000187;7.12e-07;55!CL:0000192;8.10e-07;43!CL:0000359;9.18e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.10e-20,76;CL:0000680,5.32e-12,58;CL:0000056,5.32e-12,58;CL:0000355,5.32e-12,58;CL:0002321,7.32e-12,250;CL:0000187,1.42e-11,55;CL:0000393,3.30e-10,61;CL:0000211,3.30e-10,61;CL:0000192,3.36e-09,43;CL:0000514,3.36e-09,43;CL:0002334,2.31e-08,12;CL:0000359,3.78e-07,32;CL:0000048,5.73e-07,427;CL:0000075,6.00e-07,27;CL:0000723,7.46e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000355;5.47e-07;58!CL:0000514;8.10e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;8.18e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.32e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.47e-13!83;UBERON:0002329!5.47e-13!83;UBERON:0003077!5.47e-13!83;UBERON:0003059!5.47e-13!83;UBERON:0007282!5.47e-13!83;UBERON:0009618!5.47e-13!83;UBERON:0007285!5.47e-13!83;UBERON:0005256!2.68e-11!143;UBERON:0004290!6.97e-11!70;UBERON:0000486!6.93e-10!82;UBERON:0000481!1.30e-09!347;UBERON:0001134!1.61e-09!61;UBERON:0002036!1.61e-09!61;UBERON:0003082!1.61e-09!61;UBERON:0002385!5.00e-09!63;UBERON:0001015!5.00e-09!63;UBERON:0000383!5.00e-09!63;UBERON:0002100!5.57e-09!216;UBERON:0000475!2.26e-08!365;UBERON:0003104!6.81e-08!238;UBERON:0009142!6.81e-08!238;UBERON:0003102!6.61e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.08e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.68e-12,78;UBERON:0002329,1.64e-11,71;UBERON:0003059,1.64e-11,71;UBERON:0007282,1.64e-11,71;UBERON:0004290,1.64e-11,71;UBERON:0009618,1.64e-11,71;UBERON:0007524,2.57e-11,73;UBERON:0003077,4.67e-11,72;UBERON:0007285,4.67e-11,72;UBERON:0000486,2.04e-10,83;UBERON:0001134,5.21e-10,62;UBERON:0002036,5.21e-10,62;UBERON:0003082,5.21e-10,62;UBERON:0003104,3.44e-09,160;UBERON:0009142,3.44e-09,160;UBERON:0002385,3.88e-09,64;UBERON:0001015,3.88e-09,64;UBERON:0000383,3.88e-09,64;UBERON:0005256,1.18e-07,122;UBERON:0002100,3.04e-07,199 | |||
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|phase1_expression=21.8014055124668,12.846031433459,30.5871056888257,11.0080628188443,8.49226079411847,11.3404008133048,5.06599756336621,16.4247167090976,0.783556884599516,6.63481628554074,30.7032513907868,10.9220686065086,12.3970479767373,6.31208400096238,6.95934489028623,10.0848771967766,9.04041792035965,4.38186054232424,4.39139518911456,4.80172126499473,7.14002419354885,6.89600387251793,1.14494394852423,6.84372125364421,2.25976751270645,0.0764134057479513,0,0,0,0,0.154816123316076,4.59710612239464,1.50602959389125,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,1.85823822537062,0,0.256160706529101,0,0,0,0,0,0,0.449446968890169,0.306083892370903,0.320929027076094,0,0,0,0,0.290209238628584,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0.670700859703636,3.06870148424473,29.999449647919,10.5280961233537,28.5347642352823,16.7010048880731,14.5990461090791,8.31906391043797,10.4212816807405,8.60780899792635,1.70272798147026,36.4295288292542,12.6066710546706,0,0.174129737299267,0,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0.81014194788176,0.267899184852239,0.44905874525234,0,0,4.74632829784064,0.549605231791222,0,0,20.9325145028416,37.2728963771489,2.27934920996244,65.4101353217301,97.5244510545967,17.0240823455211,5.60677600142307,5.33744978648525,7.89336154934912,1.55605517699883,12.3933818304113,2.94231425604226,2.8757911252537,1.15235184896,57.643072231114,18.7296046098192,4.56377457235559,3.88566569434683,9.86449788607625,4.04682360920329,4.07307339436521,4.49139176760765,7.86139630795315,12.9157226469707,10.6920257155385,21.2649559179559,24.5743567723267,38.0867615162606,5.89176398839232,5.63033339423839,8.86605169549385,26.3386572528503,14.4049264025539,14.8735678317531,3.40296549480063,21.5267562826634,8.32873816392413,1.05965950579781,2.10063767259082,0.412210116953756,39.6766431670269,4.09457083929498,10.6329089311998,3.02054715999716,13.126556260694,2.85354685791128,8.24394889775941,23.7856426986132,7.15339897416246,8.64759020783487,3.47869535693934,3.81844568827169,0.573609190778008,1.09776335516636,0.265059536642971,0.580969714347592,1.34759371519982,1.7662459561294,1.45990943630332,10.9514672630871,5.14592750554308,5.52539685409922,4.17931135228781,2.88751792667834,7.92655560266954,5.56329477257736,6.02527574708705,10.5882213823098,9.58669554006587,6.64357733511071,6.60673409984806,6.08286541888573,3.8474715694639,0,23.8411015465858,3.2925920906512,13.2307840246988,0,0,0.590789906681404,0,2.33678033231916,7.54898365313512,7.24351883696929,6.74410519545717,0.201057944823262,2.40729957412177,29.9743640885499,15.5990217791937,5.77325368101093,7.76733713333015,9.51010423310155,0.433099343283221,0,0,0,0,0,0,0,5.62403003920662,2.01578553838631,2.83550194484773,0.268675568108545,17.1474023723238,1.91691339582606,0.492663237895943,0.088048434013226,0,0,0,5.07983154337352,26.3572013635212,7.03304683260282,6.84289784090821,4.31875469353959,4.80548892550268,5.71652865261156,8.63409349459278,4.79556075716608,4.32695886343605,31.6715703606556,39.3422090437071,15.215449546008,7.1803291477915,3.12022310734098,13.6319908358935,14.1849132023278,18.1167081730948,5.00422977803516,18.4491345833091,5.76268235746538,12.0522388188682,3.909311436168,5.543663110534,10.5503781970855,9.58686804460323,5.29856853264902,0,0,0,23.4832358381751,26.4182452418462,7.13184525203592,6.08081488003833,3.08214483825575,9.31117008847457,0,0,0,0.128343036279748,6.60646022978405,3.90419561572865,0.773288812777695,1.84267891867784,2.55175500661265,0,0,0,2.33113834266366,5.50187573165645,13.291986161287,40.5543179985074,35.5073687706352,41.4757351539248,27.1768082783095,11.1350056899256,15.9185252839189,13.4514992680256,31.2186031311655,14.0120568091694,3.21469373531907,7.04884166865866,5.49029478097369,0,0,0,11.8219752864041,38.2801510874143,12.7003923198466,45.8999444464737,86.5525529344672,34.8018517097011,48.5647375679107,15.3512174720011,20.7501558275254,11.8734453155993,14.1872918298443,20.5971601363227,24.6381468041427,17.1353961630595,19.0585020674333,0.725156697549733,2.6065841139427,6.44566922551274,7.11849578620562,1.0925470080403,0.524497659837696,17.1455852904816,6.85436500229291,20.3930939985982,10.2297457257282,4.22206515571503,0,0,5.39789790255348,13.880452742126,6.50271450105247,8.02703638167765,3.56826782263054,9.14183609821597,8.2833659247206,0,0,3.33385162651306,2.62411716559765,19.5227036798582,2.26690225624989,0.457847324091717,0.495056999523528,16.0794350638928,0.650060246036521,1.6068392984416,30.0645933888499,13.2481810718594,9.97773885719842,13.6458206759685,18.6911226070796,6.67076792005451,10.8237816818448,9.61545984984763,3.96683796866347,0.960950336825531,3.31793052485919,4.55210013849975,54.38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| ||
|short_description=p@chr17:4872349..4872405,- | |short_description=p@chr17:4872349..4872405,- | ||
}} | }} |
Latest revision as of 18:47, 25 July 2015
Short description: | p@chr17:4872349..4872405, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:4872349..4872405, - |
Coexpression cluster: | C2420_Smooth_osteosarcoma_Fibroblast_Preadipocyte_mesenchymal_thyroid_osteoclastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.10e-20 | 76 |
muscle precursor cell | 5.32e-12 | 58 |
myoblast | 5.32e-12 | 58 |
multi-potent skeletal muscle stem cell | 5.32e-12 | 58 |
embryonic cell | 7.32e-12 | 250 |
muscle cell | 1.42e-11 | 55 |
electrically responsive cell | 3.30e-10 | 61 |
electrically active cell | 3.30e-10 | 61 |
smooth muscle cell | 3.36e-09 | 43 |
smooth muscle myoblast | 3.36e-09 | 43 |
preadipocyte | 2.31e-08 | 12 |
vascular associated smooth muscle cell | 3.78e-07 | 32 |
multi fate stem cell | 5.73e-07 | 427 |
columnar/cuboidal epithelial cell | 6.00e-07 | 27 |
somatic stem cell | 7.46e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.68e-12 | 78 |
somite | 1.64e-11 | 71 |
presomitic mesoderm | 1.64e-11 | 71 |
presumptive segmental plate | 1.64e-11 | 71 |
dermomyotome | 1.64e-11 | 71 |
trunk paraxial mesoderm | 1.64e-11 | 71 |
dense mesenchyme tissue | 2.57e-11 | 73 |
paraxial mesoderm | 4.67e-11 | 72 |
presumptive paraxial mesoderm | 4.67e-11 | 72 |
multilaminar epithelium | 2.04e-10 | 83 |
skeletal muscle tissue | 5.21e-10 | 62 |
striated muscle tissue | 5.21e-10 | 62 |
myotome | 5.21e-10 | 62 |
mesenchyme | 3.44e-09 | 160 |
entire embryonic mesenchyme | 3.44e-09 | 160 |
muscle tissue | 3.88e-09 | 64 |
musculature | 3.88e-09 | 64 |
musculature of body | 3.88e-09 | 64 |
trunk mesenchyme | 1.18e-07 | 122 |
trunk | 3.04e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.32e-07 | 14 |