FFCP PHASE1:Hg19::chr17:48133054..48133069,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284080 | |EntrezGene=284080 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_ENST00000499842,NR_038230_5end | |association_with_transcript=33bp_to_ENST00000499842,NR_038230_5end | ||
|cluster_id=chr17:48133054..48133069,- | |||
|description=CAGE_peak_1_at_LOC284080_5end | |description=CAGE_peak_1_at_LOC284080_5end | ||
|id=chr17:48133054..48133069,- | |id=chr17:48133054..48133069,- | ||
|ontology_enrichment_celltype=CL:0000066!1.79e-29!254;CL:0000220!1.12e-14!246;CL:0002321!3.42e-14!248;CL:0002076!7.97e-13!43;CL:0000223!7.85e-12!59;CL:0000548!9.12e-10!679;CL:0000004!9.12e-10!679;CL:0000255!9.12e-10!679;CL:0000012!2.60e-09!682;CL:0002368!3.70e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.79e-29!254;CL:0000220!1.12e-14!246;CL:0002321!3.42e-14!248;CL:0002076!7.97e-13!43;CL:0000223!7.85e-12!59;CL:0000548!9.12e-10!679;CL:0000004!9.12e-10!679;CL:0000255!9.12e-10!679;CL:0000012!2.60e-09!682;CL:0002368!3.70e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.02e-10;42!CL:0002368;3.91e-09;13!CL:0000244;2.87e-08;4!CL:0000731;2.87e-08;4!CL:0002202;3.39e-08;9!CL:0002632;3.39e-08;9!CL:0000077;9.94e-08;19!CL:0002594;1.23e-07;4!CL:0002328;1.56e-07;3!CL:0000346;7.59e-07;3!CL:1000428;7.59e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.65e-23,253;CL:0000223,2.29e-14,58;CL:0002076,1.83e-13,42;CL:0002321,2.74e-10,250;CL:0002368,2.16e-09,13;CL:0000244,1.74e-08,4;CL:0000731,1.74e-08,4;CL:0002202,2.48e-08,9;CL:0002632,2.48e-08,9;CL:0000077,1.03e-07,19;CL:0002328,1.31e-07,3;CL:0002594,1.40e-07,4;CL:0000076,1.41e-07,63;CL:0000346,5.73e-07,3;CL:1000428,5.73e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.99e-07;58 | |||
|ontology_enrichment_disease=DOID:305!9.02e-14!106;DOID:0050687!4.61e-11!143 | |ontology_enrichment_disease=DOID:305!9.02e-14!106;DOID:0050687!4.61e-11!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.00e-09,106;DOID:0050687,1.85e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.66e-13!238;UBERON:0009142!8.66e-13!238;UBERON:0004119!9.79e-12!169;UBERON:0000925!9.79e-12!169;UBERON:0006595!9.79e-12!169;UBERON:0000481!3.75e-11!347;UBERON:0001048!7.12e-11!168;UBERON:0000475!9.25e-10!365;UBERON:0005177!1.30e-09!107;UBERON:0002100!3.00e-09!216;UBERON:0000466!3.15e-09!126;UBERON:0001007!3.84e-09!155;UBERON:0001555!3.84e-09!155;UBERON:0007026!3.84e-09!155;UBERON:0005911!5.87e-09!82;UBERON:0000464!5.41e-08!104;UBERON:0001041!2.70e-07!98;UBERON:0000077!3.66e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0005910;6.12e-12;6!UBERON:0000365;3.54e-10;5!UBERON:0006554;3.22e-08;30!UBERON:0001008;3.22e-08;30!UBERON:0001310;1.23e-07;4!UBERON:0004815;1.56e-07;3!UBERON:0002031;1.56e-07;3!UBERON:0000486;1.91e-07;12!UBERON:0005911;2.21e-07;36!UBERON:0001264;2.81e-07;10!UBERON:0000353;5.66e-07;15!UBERON:0000412;7.59e-07;3!UBERON:0001992;7.59e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,3.81e-12,6;UBERON:0005177,1.08e-10,101;UBERON:0000365,2.19e-10,5;UBERON:0005911,2.25e-10,82;UBERON:0002100,1.59e-08,199;UBERON:0004119,7.54e-08,160;UBERON:0000925,7.54e-08,160;UBERON:0006595,7.54e-08,160;UBERON:0004815,1.31e-07,3;UBERON:0002031,1.31e-07,3;UBERON:0001310,1.40e-07,4;UBERON:0001264,2.23e-07,10;UBERON:0000412,5.73e-07,3;UBERON:0001992,5.73e-07,3;UBERON:0000353,6.01e-07,15;UBERON:0006554,9.98e-07,47 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0.245733936501509,2.09340350391728,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,1.02000345622126,0.313454721478088,0.286235987131057,0.958120975510189,0.753255837568817,0,0,0,0,0,0,3.67768489791571,6.6265302131215,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.472674085820339,1.10864698731282,0.43917392846563,0.261958150995425,1.82147644146271,1.85392221392215,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0,0,0.835979866147242,0.516833518338658,0.35576626268671,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0,0,0,2.18047026071267,0,0.25326102332916,0.529636723252875,0.286836620748814,0,0,1.06748995729705,0.49333509683432,0.311211035399766,0.269421344139376,1.30769522490767,0.151357427644931,0,0,0.312160076830321,0,0,0.822041490506354,0.161872944368132,0.280901613404497,0.204154171254893,0.737005903870608,0.103325781175765,0,0,0,0,0.168336113954066,0.375355559615893,0,0,0,0.150238058906597,0.226864366320042,0.358779271377724,0.213557388818567,0.211931901159562,0.600182192168805,0.206105058476878,1.28820270022815,0,0.506328996723799,0.68205903612839,1.00973509697646,0,0,0.355009592516614,0.302256294682921,0.847802961552438,0.773043412653187,0.272746120590835,2.29443676311203,0,0,0,0.207322110030741,0.252320850875628,0,1.56449532329816,2.57296375277154,6.90674606762403,0.928735856063958,0,0.236613600079688,0,0,0.110293972732394,0.653638332277218,0.71181185733329,0.674156540800822,0.196221465125346,0.38474715694639,0.738155454624648,2.80483547606892,0.4115740113314,2.94017422771084,0,0,0,0,0,0.343135620597051,1.86575485194663,0,0.402115889646523,1.574003567695,0.651616610620649,0,0,0.231860809950154,0.117408694235822,1.01056513432752,0.462985512576611,0.190254152234598,0,0.858486162094873,0,0.234004265139238,0.297262324577456,0,0.671928512795438,0.992425680696705,0.447792613514241,1.45316969256981,4.98397482914775,0,0,0.829312462163088,0.144119953416961,0.88369703398466,0,0.763976851116555,0,0,0.411309970813294,0,0,0.336393253036082,0,0.07333828582095,0,0,0.845302752556,1.06375246633948,1.04007436911366,0.514414748524284,1.41849132023278,1.0656887160644,0.428933980974443,0.542621605391443,0.823240336780769,0.325736184293735,0.710783897485092,0.791951872933429,2.41151501647669,0,1.59956785891291,0,0,0,0.718874566474748,0,0,0.289562613335158,2.67119219315498,0.716243852959582,0,0.197030760201927,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0.831883446123229,1.07057393278297,0.157702415033935,0.468565659970853,0.601892199455438,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0.979005787313703,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,2.00506470303285,0.460404944679482,0,0.182091168006717,0,0,0.693138033939733,2.35304930753057,0,0.422206515571503,2.27466768141793,0.340187410553031,0.215915916102139,0,1.62567862526312,1.50506932156456,0.509752546090077,3.3243040357149,1.11937377361089,0,0,0.256450125116389,0,0.976135183992909,0,0.0915694648183434,0,0.574265537996172,0.650060246036521,0,0.096670718292122,0.308097234229289,0.307007349452259,0.551346289938122,0.214840489736547,0.145016693914229,0.340906509664404,0.0890320356467374,0.661139661443912,1.92190067365106,2.55225424989168,0.6069466851333,0,0,0,0.616067160352178,0.532306030317022,0,0.37064843820784,0.715624433709956,0,0.632758849437452,0.190630193923825,0.511795582622668,0.42793898803392,0,0.78494864019923,0.179872457583315,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,1.13008116620243,0,0,1.31535265576129,1.15755106853338,0,1.21746226177622,2.16876448669825,1.97186921772569,0.286822704408103,0.196498082026242,1.07001315444375,0,0.211107635297664,0,0.379473173765715,0,0.769776901804097,4.69211592875051,3.26672954583968,0.188287601553558,3.01353760869861,1.68471475667626,3.54744122829341,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.111443384277478,0,0,0,0,0,0,4.78627431598495,2.30725423917463,0.211125408127993,0.398495976502139,0.276283915531148,0,1.53403023753232,0,0,1.97710372524119,0.179021174675609,0,0.0986434056369336,0,0,0,0,1.99613798001194,0.7812832832557,0.174919999992391,0,0.568967241427498,1.77977555204936,0,0,0,0,0,0.120596438625408,0,0,0,0,0,1.25481369850743,0.0769502585037971,1.25336261431701,0.23056390438806,0.0897576444097721,0.325942115766024,0.957003479195758,0.274792780205587,0,0,0,0,0,0,0,0,0,0.843992258112108,1.14262965711403,0.141353071433941,0,0,0.353830258013357,0,0.296521128680622,0,0,0,0,0,0,0,1.94224303627274,0,0,0,0,0.150323419414493,0,5.31723098165748,2.31694369112849,5.6507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| ||
|short_description=p1@LOC284080 | |short_description=p1@LOC284080 | ||
}} | }} |
Latest revision as of 22:17, 15 September 2015
Short description: | p1@LOC284080 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC284080_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENST00000499842, NR_038230_5end |
EntrezGene: | LOC284080 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.65e-23 | 253 |
endodermal cell | 2.29e-14 | 58 |
endo-epithelial cell | 1.83e-13 | 42 |
embryonic cell | 2.74e-10 | 250 |
respiratory epithelial cell | 2.16e-09 | 13 |
transitional epithelial cell | 1.74e-08 | 4 |
urothelial cell | 1.74e-08 | 4 |
epithelial cell of tracheobronchial tree | 2.48e-08 | 9 |
epithelial cell of lower respiratory tract | 2.48e-08 | 9 |
mesothelial cell | 1.03e-07 | 19 |
bronchial epithelial cell | 1.31e-07 | 3 |
smooth muscle cell of the umbilical artery | 1.40e-07 | 4 |
squamous epithelial cell | 1.41e-07 | 63 |
hair follicle dermal papilla cell | 5.73e-07 | 3 |
stem cell of epidermis | 5.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 3.81e-12 | 6 |
trunk region element | 1.08e-10 | 101 |
urothelium | 2.19e-10 | 5 |
endo-epithelium | 2.25e-10 | 82 |
trunk | 1.59e-08 | 199 |
endoderm-derived structure | 7.54e-08 | 160 |
endoderm | 7.54e-08 | 160 |
presumptive endoderm | 7.54e-08 | 160 |
lower respiratory tract epithelium | 1.31e-07 | 3 |
epithelium of bronchus | 1.31e-07 | 3 |
umbilical artery | 1.40e-07 | 4 |
pancreas | 2.23e-07 | 10 |
dermal papilla | 5.73e-07 | 3 |
papillary layer of dermis | 5.73e-07 | 3 |
parenchyma | 6.01e-07 | 15 |
urinary system structure | 9.98e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.00e-09 | 106 |
cell type cancer | 1.85e-07 | 143 |