FFCP PHASE1:Hg19::chr11:73020378..73020437,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:73020378..73020437,+
|short_description=p5@ARHGEF17
|description=CAGE_peak_5_at_ARHGEF17_5end
|association_with_transcript=-450bp_to_AB002335_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9828 | |EntrezGene=9828 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21726 | |HGNC=21726 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PE2 | |UniProt=Q96PE2 | ||
|association_with_transcript=-450bp_to_AB002335_5end | |||
|cluster_id=chr11:73020378..73020437,+ | |||
|description=CAGE_peak_5_at_ARHGEF17_5end | |||
|id=chr11:73020378..73020437,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.84e-22!180;CL:0000183!9.03e-12!59;CL:0000057!3.27e-11!75;CL:0000680!2.78e-10!57;CL:0000056!2.78e-10!57;CL:0000355!2.78e-10!57;CL:0000187!2.99e-10!54;CL:0000393!2.30e-08!60;CL:0000211!2.30e-08!60;CL:0000192!4.15e-08!42;CL:0000514!4.15e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000187;1.01e-08;55!CL:0000192;4.90e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.99e-13,55;CL:0000680,2.11e-12,58;CL:0000056,2.11e-12,58;CL:0000355,2.11e-12,58;CL:0000057,9.90e-12,76;CL:0000393,1.82e-10,61;CL:0000211,1.82e-10,61;CL:0000192,2.81e-10,43;CL:0000514,2.81e-10,43 | |||
|ontology_enrichment_development_v019=CL:0000514;4.90e-08;43!CL:0000355;6.87e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.61e-17!365;UBERON:0000481!8.25e-15!347;UBERON:0005256!4.67e-14!143;UBERON:0002100!6.70e-14!216;UBERON:0000119!5.06e-12!312;UBERON:0000914!1.71e-11!83;UBERON:0002329!1.71e-11!83;UBERON:0003077!1.71e-11!83;UBERON:0003059!1.71e-11!83;UBERON:0007282!1.71e-11!83;UBERON:0009618!1.71e-11!83;UBERON:0007285!1.71e-11!83;UBERON:0000483!2.49e-11!309;UBERON:0000468!5.83e-11!659;UBERON:0002385!7.14e-11!63;UBERON:0001015!7.14e-11!63;UBERON:0000383!7.14e-11!63;UBERON:0001134!2.17e-10!61;UBERON:0002036!2.17e-10!61;UBERON:0003082!2.17e-10!61;UBERON:0003104!4.12e-10!238;UBERON:0009142!4.12e-10!238;UBERON:0004290!8.07e-10!70;UBERON:0000467!2.62e-09!625;UBERON:0000480!4.22e-09!626;UBERON:0000477!8.02e-08!286;UBERON:0000486!9.08e-08!82;UBERON:0000490!2.29e-07!138;UBERON:0000062!2.55e-07!511;UBERON:0003914!4.63e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.83e-13,160;UBERON:0009142,4.83e-13,160;UBERON:0002385,1.85e-12,64;UBERON:0001015,1.85e-12,64;UBERON:0000383,1.85e-12,64;UBERON:0001134,7.35e-12,62;UBERON:0002036,7.35e-12,62;UBERON:0003082,7.35e-12,62;UBERON:0007524,1.24e-11,73;UBERON:0003077,3.32e-11,72;UBERON:0007285,3.32e-11,72;UBERON:0002329,4.21e-11,71;UBERON:0003059,4.21e-11,71;UBERON:0007282,4.21e-11,71;UBERON:0004290,4.21e-11,71;UBERON:0009618,4.21e-11,71;UBERON:0007503,6.76e-11,78;UBERON:0002100,6.87e-11,199;UBERON:0005256,1.31e-10,122;UBERON:0000486,1.15e-07,83 | |||
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|phase1_expression=2.54349730978779,1.2846031433459,4.36958652697511,4.00293193412522,4.02264984984559,3.48935409640147,0,0.631719873426831,0.261185628199839,2.21160542851358,3.48900583986214,1.74753097704138,1.05506791291381,0.866364470720326,2.31978163009541,1.34465029290355,0,0.730310090387373,0,4.062994916534,3.26401105990805,3.13454721478088,0.572471974262113,1.64249310087461,1.75759695432724,0.0764134057479513,0,0,0,0,0,0,1.8072355126695,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0,1.79007586580942,0.361439152384566,3.50936537445123,1.15877215168659,1.5905718941022,5.83961844363163,2.45790524626576,2.4390233720882,0.790513071238134,1.96468613246569,0.364295288292542,0,0.649094787309367,0,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0.275118041940067,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0.805658634218294,0.760272105718513,0.488124115096339,0,0.81014194788176,0.17859945656816,0,0.563057402416611,1.53316637465883,0.949265659568129,0.183201743930407,0,0,0.436094052142534,7.45457927542978,1.8994576749687,3.31022952033047,2.58152958673932,1.06400514659507,1.12135520028461,9.60740961567345,1.48000529050296,0.622422070799533,1.48181739276657,0.980771418680752,1.96764655938411,2.88087962239999,2.81185718200556,0,0,0.149448680551801,0.704606991862589,1.29498355494505,0.280901613404497,1.22492502752936,0.245668634623536,0.413303124703062,0,1.7308685049499,2.73048408581408,4.31170885089743,0.841680569770331,1.62654075833553,0.831192346452549,3.07284334616587,3.67785354958824,1.65261864797256,1.02088964844019,6.99619579186562,1.06778694409284,1.48352330811693,6.30191301777245,1.54578793857658,7.21393512127762,3.53622027030021,4.38818463827292,1.26668106709558,6.05841058185875,2.30124746605748,0.484938170456436,7.4552014428489,4.03008392910561,3.73033303083073,0.386521706326594,0.545492241181669,0.286804595389004,0,0,0.464775771478074,0.207322110030741,0.252320850875628,0,1.56449532329816,3.21620469096443,2.76269842704961,1.39310378409594,0,0,0.842923450390509,0.241011029883482,0.110293972732394,0.435758888184812,0.237270619111097,0.269662616320329,0.392442930250692,0.38474715694639,1.4763109092493,1.40241773803446,3.7041661019826,5.88034845542168,0,0,0.590789906681404,0,2.45976877086227,1.3725424823882,1.42675371031213,2.24803506515239,0.100528972411631,0.185176890317059,2.93227474779292,1.03993478527958,2.88662684050547,0.811512834825538,0.587043471179108,1.15493158208859,0,0.380508304469197,0.790204397959275,0,0,0,0,0.93733833986777,0.671928512795438,0.141775097242386,0.53735113621709,0.581267877027924,1.53353071666084,0,0,0,0.144119953416961,0.12624243342638,0.571481048629521,0.763976851116555,2.34434894420094,0,0.719792448923265,0.600686115687835,0.571652865261156,2.13049060256185,8.28324130783232,1.24675085895615,0.904902010304444,28.6125156681506,2.535908257668,16.488163228262,14.5610411675913,2.82928111688356,5.67396528093113,1.3321108950805,3.86040582876998,3.25572963234866,1.64648067356154,1.62868092146868,4.26470338491055,0,1.20575750823834,1.74306691720059,1.3996218765488,0,0,0,3.83399768786532,1.14861935834114,2.85273810081437,1.30303176000821,0.821905290201534,0.716243852959582,0,0,0,0,1.01637849688985,0,0,0.670065061337395,0,0,0,0,2.20844685094452,1.00034104211935,1.35632511849868,6.03115498439341,4.10386674233472,1.41932173530541,5.38850508966481,2.40756879782175,2.27407504055985,0,1.32845119707087,3.68738337083406,1.21637060255316,12.1396717626899,5.14715135716284,0,0,0,3.33440328590885,0,2.72151263996712,3.2254015016441,8.44040853084343,3.92924132206303,4.61300937320523,1.53512174720011,2.89537058058494,2.96836132889982,1.69630663182921,0.532685175939381,0.574890092096664,0,0.581051892299796,0.725156697549733,1.00253235151642,0.0920809889358963,0.803701137152247,1.63882051206045,1.44236856455367,0.451199612907412,1.15523005656622,3.13739907670742,0,0.949964660035881,0,0.340187410553031,0.647747748306418,0,1.89662506280697,4.51520796469368,0.254876273045038,2.49322802678617,1.56712328305525,0,0,0.512900250232778,2.62411716559765,2.60302715731442,1.54561517471583,1.37354197227515,1.32015199872941,0,0,0,1.54673149267395,1.84858340537573,1.5350367472613,2.75673144969061,1.07420244868274,1.74020032697074,1.02271952899321,1.95870478422822,0.330569830721956,0.192190067365106,0.765676274967505,0.50578890427775,1.85938219718914,4.09256050879832,2.0911118104818,1.54016790088044,2.12922412126809,0,1.29726953372744,1.43124886741991,4.09374206295634,1.58189712359363,4.19386426632415,6.90924036540602,5.99114583247489,0.636406495851874,3.13979456079692,2.51821440616641,2.47083326762449,2.23843564456804,1.01091240786658,4.75530963519025,1.26377536871694,6.82687234725426,1.21856744815642,3.16950440270266,2.45699840534374,1.55545975149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| ||
|short_description=p5@ARHGEF17 | |||
}} | }} |
Latest revision as of 02:51, 20 September 2015
Short description: | p5@ARHGEF17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ARHGEF17_5end |
Coexpression cluster: | NA |
Association with transcript: | -450bp_to_AB002335_5end |
EntrezGene: | ARHGEF17 |
HGNC: | 21726 |
UniProt: | Q96PE2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.99e-13 | 55 |
muscle precursor cell | 2.11e-12 | 58 |
myoblast | 2.11e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.11e-12 | 58 |
fibroblast | 9.90e-12 | 76 |
electrically responsive cell | 1.82e-10 | 61 |
electrically active cell | 1.82e-10 | 61 |
smooth muscle cell | 2.81e-10 | 43 |
smooth muscle myoblast | 2.81e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 4.83e-13 | 160 |
entire embryonic mesenchyme | 4.83e-13 | 160 |
muscle tissue | 1.85e-12 | 64 |
musculature | 1.85e-12 | 64 |
musculature of body | 1.85e-12 | 64 |
skeletal muscle tissue | 7.35e-12 | 62 |
striated muscle tissue | 7.35e-12 | 62 |
myotome | 7.35e-12 | 62 |
dense mesenchyme tissue | 1.24e-11 | 73 |
paraxial mesoderm | 3.32e-11 | 72 |
presumptive paraxial mesoderm | 3.32e-11 | 72 |
somite | 4.21e-11 | 71 |
presomitic mesoderm | 4.21e-11 | 71 |
presumptive segmental plate | 4.21e-11 | 71 |
dermomyotome | 4.21e-11 | 71 |
trunk paraxial mesoderm | 4.21e-11 | 71 |
epithelial vesicle | 6.76e-11 | 78 |
trunk | 6.87e-11 | 199 |
trunk mesenchyme | 1.31e-10 | 122 |
multilaminar epithelium | 1.15e-07 | 83 |