FFCP PHASE1:Hg19::chr20:3777116..3777131,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=994 | |EntrezGene=994 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1726 | |HGNC=1726 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=38bp_to_ENST00000340833_5end | |association_with_transcript=38bp_to_ENST00000340833_5end | ||
|cluster_id=chr20:3777116..3777131,+ | |||
|description=CAGE_peak_3_at_CDC25B_5end | |description=CAGE_peak_3_at_CDC25B_5end | ||
|id=chr20:3777116..3777131,+ | |id=chr20:3777116..3777131,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.23e-26!180;CL:0000220!2.57e-22!246;CL:0002321!1.52e-21!248;CL:0000066!4.65e-15!254;CL:0000222!8.40e-14!119;CL:0000333!2.66e-11!41;CL:0000057!5.77e-11!75;CL:0000133!7.97e-10!59;CL:0000221!1.52e-09!71;CL:0000183!7.98e-09!59;CL:0000680!1.12e-07!57;CL:0000056!1.12e-07!57;CL:0000355!1.12e-07!57;CL:0000187!2.35e-07!54;CL:0000095!3.13e-07!17;CL:0000123!3.13e-07!17 | |ontology_enrichment_celltype=CL:0000055!3.23e-26!180;CL:0000220!2.57e-22!246;CL:0002321!1.52e-21!248;CL:0000066!4.65e-15!254;CL:0000222!8.40e-14!119;CL:0000333!2.66e-11!41;CL:0000057!5.77e-11!75;CL:0000133!7.97e-10!59;CL:0000221!1.52e-09!71;CL:0000183!7.98e-09!59;CL:0000680!1.12e-07!57;CL:0000056!1.12e-07!57;CL:0000355!1.12e-07!57;CL:0000187!2.35e-07!54;CL:0000095!3.13e-07!17;CL:0000123!3.13e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0000095;1.31e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.07e-20,250;CL:0000222,2.41e-14,121;CL:0000066,3.61e-12,253;CL:0000333,1.88e-11,41;CL:0000057,8.14e-11,76;CL:0000133,2.88e-10,59;CL:0000221,1.48e-09,72;CL:0000680,4.84e-08,58;CL:0000056,4.84e-08,58;CL:0000355,4.84e-08,58;CL:0000187,1.05e-07,55;CL:0000095,1.60e-07,17;CL:0000123,1.60e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.72e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.24e-15!365;UBERON:0000119!3.37e-15!312;UBERON:0000483!9.00e-15!309;UBERON:0000481!1.99e-13!347;UBERON:0005256!6.53e-13!143;UBERON:0000914!9.73e-12!83;UBERON:0002329!9.73e-12!83;UBERON:0003077!9.73e-12!83;UBERON:0003059!9.73e-12!83;UBERON:0007282!9.73e-12!83;UBERON:0009618!9.73e-12!83;UBERON:0007285!9.73e-12!83;UBERON:0002100!1.39e-10!216;UBERON:0003104!2.35e-10!238;UBERON:0009142!2.35e-10!238;UBERON:0004290!5.76e-10!70;UBERON:0000490!7.69e-10!138;UBERON:0000477!9.03e-09!286;UBERON:0000064!2.33e-08!219;UBERON:0003102!3.03e-08!95;UBERON:0000486!3.37e-08!82;UBERON:0001134!1.87e-07!61;UBERON:0002036!1.87e-07!61;UBERON:0003082!1.87e-07!61;UBERON:0002385!8.83e-07!63;UBERON:0001015!8.83e-07!63;UBERON:0000383!8.83e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,4.05e-14,309;UBERON:0000483,1.07e-13,306;UBERON:0007503,3.73e-12,78;UBERON:0000490,1.54e-11,148;UBERON:0007524,1.05e-10,73;UBERON:0002329,1.37e-10,71;UBERON:0003059,1.37e-10,71;UBERON:0007282,1.37e-10,71;UBERON:0004290,1.37e-10,71;UBERON:0009618,1.37e-10,71;UBERON:0003077,2.33e-10,72;UBERON:0007285,2.33e-10,72;UBERON:0003104,6.20e-10,160;UBERON:0009142,6.20e-10,160;UBERON:0005256,3.15e-09,122;UBERON:0000486,9.96e-09,83;UBERON:0001134,6.10e-08,62;UBERON:0002036,6.10e-08,62;UBERON:0003082,6.10e-08,62;UBERON:0002100,1.20e-07,199;UBERON:0003102,2.30e-07,99;UBERON:0002385,4.23e-07,64;UBERON:0001015,4.23e-07,64;UBERON:0000383,4.23e-07,64 | |||
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| ||
|short_description=p3@CDC25B | |short_description=p3@CDC25B | ||
}} | }} |
Latest revision as of 04:31, 16 September 2015
Short description: | p3@CDC25B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDC25B_5end |
Coexpression cluster: | NA |
Association with transcript: | 38bp_to_ENST00000340833_5end |
EntrezGene: | CDC25B |
HGNC: | 1726 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.07e-20 | 250 |
mesodermal cell | 2.41e-14 | 121 |
epithelial cell | 3.61e-12 | 253 |
migratory neural crest cell | 1.88e-11 | 41 |
fibroblast | 8.14e-11 | 76 |
neurectodermal cell | 2.88e-10 | 59 |
ectodermal cell | 1.48e-09 | 72 |
muscle precursor cell | 4.84e-08 | 58 |
myoblast | 4.84e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.84e-08 | 58 |
muscle cell | 1.05e-07 | 55 |
neuron associated cell | 1.60e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.60e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cell layer | 4.05e-14 | 309 |
epithelium | 1.07e-13 | 306 |
epithelial vesicle | 3.73e-12 | 78 |
unilaminar epithelium | 1.54e-11 | 148 |
dense mesenchyme tissue | 1.05e-10 | 73 |
somite | 1.37e-10 | 71 |
presomitic mesoderm | 1.37e-10 | 71 |
presumptive segmental plate | 1.37e-10 | 71 |
dermomyotome | 1.37e-10 | 71 |
trunk paraxial mesoderm | 1.37e-10 | 71 |
paraxial mesoderm | 2.33e-10 | 72 |
presumptive paraxial mesoderm | 2.33e-10 | 72 |
mesenchyme | 6.20e-10 | 160 |
entire embryonic mesenchyme | 6.20e-10 | 160 |
trunk mesenchyme | 3.15e-09 | 122 |
multilaminar epithelium | 9.96e-09 | 83 |
skeletal muscle tissue | 6.10e-08 | 62 |
striated muscle tissue | 6.10e-08 | 62 |
myotome | 6.10e-08 | 62 |
trunk | 1.20e-07 | 199 |
surface structure | 2.30e-07 | 99 |
muscle tissue | 4.23e-07 | 64 |
musculature | 4.23e-07 | 64 |
musculature of body | 4.23e-07 | 64 |