FFCP PHASE1:Hg19::chr20:35178050..35178086,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:35178050..35178086,- | |||
|coexpression_cluster_id=C384 | |||
|description=CAGE_peak_at_chr20:35178050..35178086,- | |description=CAGE_peak_at_chr20:35178050..35178086,- | ||
|id=chr20:35178050..35178086,- | |id=chr20:35178050..35178086,- | ||
|ontology_enrichment_celltype=CL:0000055!3.80e-18!180;CL:0000183!2.17e-14!59;CL:0000192!4.99e-14!42;CL:0000514!4.99e-14!42;CL:0000680!8.67e-14!57;CL:0000056!8.67e-14!57;CL:0000355!8.67e-14!57;CL:0000187!3.15e-13!54;CL:0000393!1.98e-12!60;CL:0000211!1.98e-12!60;CL:0000359!8.29e-11!32;CL:0000057!3.84e-10!75;CL:0000222!7.24e-08!119 | |ontology_enrichment_celltype=CL:0000055!3.80e-18!180;CL:0000183!2.17e-14!59;CL:0000192!4.99e-14!42;CL:0000514!4.99e-14!42;CL:0000680!8.67e-14!57;CL:0000056!8.67e-14!57;CL:0000355!8.67e-14!57;CL:0000187!3.15e-13!54;CL:0000393!1.98e-12!60;CL:0000211!1.98e-12!60;CL:0000359!8.29e-11!32;CL:0000057!3.84e-10!75;CL:0000222!7.24e-08!119 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.62e-10;32!CL:0000192;2.43e-09;43!CL:0002334;4.52e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,8.15e-13,43;CL:0000514,8.15e-13,43;CL:0000359,9.19e-11,32;CL:0000187,1.37e-09,55;CL:0000680,2.46e-09,58;CL:0000056,2.46e-09,58;CL:0000355,2.46e-09,58;CL:0000057,6.65e-09,76;CL:0000393,8.25e-08,61;CL:0000211,8.25e-08,61;CL:0000136,1.87e-07,15;CL:0002334,3.39e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;2.43e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.74e-17!143;UBERON:0000914!6.24e-17!83;UBERON:0002329!6.24e-17!83;UBERON:0003077!6.24e-17!83;UBERON:0003059!6.24e-17!83;UBERON:0007282!6.24e-17!83;UBERON:0009618!6.24e-17!83;UBERON:0007285!6.24e-17!83;UBERON:0004290!9.41e-16!70;UBERON:0002385!1.01e-15!63;UBERON:0001015!1.01e-15!63;UBERON:0000383!1.01e-15!63;UBERON:0002100!8.54e-15!216;UBERON:0001134!1.36e-14!61;UBERON:0002036!1.36e-14!61;UBERON:0003082!1.36e-14!61;UBERON:0000486!1.57e-14!82;UBERON:0000481!3.63e-13!347;UBERON:0003104!3.96e-13!238;UBERON:0009142!3.96e-13!238;UBERON:0000468!4.71e-11!659;UBERON:0000926!2.18e-10!448;UBERON:0004120!2.18e-10!448;UBERON:0006603!2.18e-10!448;UBERON:0000475!1.15e-08!365;UBERON:0004872!2.15e-08!84;UBERON:0000490!2.85e-08!138;UBERON:0001135!1.29e-07!15;UBERON:0003914!3.19e-07!118;UBERON:0001637!3.33e-07!42;UBERON:0003509!3.33e-07!42;UBERON:0004572!3.33e-07!42;UBERON:0002049!3.80e-07!79;UBERON:0007798!3.80e-07!79;UBERON:0000467!5.59e-07!625;UBERON:0001009!5.67e-07!113;UBERON:0000480!7.62e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;5.52e-08;15!UBERON:0003688;3.12e-07;6!UBERON:0002358;3.12e-07;6!UBERON:0003684;3.12e-07;6!UBERON:0001178;3.12e-07;6!UBERON:0004457;5.50e-07;9!UBERON:0000042;5.50e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,5.86e-13,160;UBERON:0009142,5.86e-13,160;UBERON:0005256,1.60e-12,122;UBERON:0007503,3.33e-11,78;UBERON:0002385,7.34e-11,64;UBERON:0001015,7.34e-11,64;UBERON:0000383,7.34e-11,64;UBERON:0007524,1.58e-10,73;UBERON:0002329,3.73e-10,71;UBERON:0003059,3.73e-10,71;UBERON:0007282,3.73e-10,71;UBERON:0004290,3.73e-10,71;UBERON:0009618,3.73e-10,71;UBERON:0002100,6.79e-10,199;UBERON:0003077,7.23e-10,72;UBERON:0007285,7.23e-10,72;UBERON:0001134,1.39e-09,62;UBERON:0002036,1.39e-09,62;UBERON:0003082,1.39e-09,62;UBERON:0000926,1.90e-09,315;UBERON:0004120,1.90e-09,315;UBERON:0006603,1.90e-09,315;UBERON:0000486,4.97e-09,83;UBERON:0001135,6.34e-08,15;UBERON:0003688,2.73e-07,6;UBERON:0002358,2.73e-07,6;UBERON:0003684,2.73e-07,6;UBERON:0001178,2.73e-07,6 | |||
|phase1_expression=5.26867299884614,5.99481466894753,2.67813367782345,11.0080628188443,9.38618298297304,17.4467704820074,10.1319951267324,1.89515962028049,1.82829939739887,1.96587149201207,2.09340350391728,0.436882744260345,0,0.618831764800233,0.662794751455832,3.36162573225888,2.41077811209591,4.38186054232424,5.85519358548608,0.123121058076788,0.204000691244253,1.56727360739044,0,0.136874425072884,1.63205431473244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66221330396589,1.44575660953827,0.50133791063589,0.869079113764942,0,0,0.661743720148475,3.1042115644759,1.05401742831751,2.22664428346111,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0.550236083880135,0,0.258416759169329,0,0,0,0,0.24406205754817,0,1.62028389576352,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,6.95760732373446,1.64619665163954,0.529636723252875,0.860509862246441,0.709336764396714,6.16745360156538,3.20246987189115,10.1133694851036,0,0.942974704487816,0.326923806226917,0,0,0.234321431833797,2.49728061464256,0,0.298897361103602,0.23486899728753,0.323745888736263,0.280901613404497,0,1.10550885580591,0,1.18800285728205,5.43987244412825,0,1.43723628363248,0,0.125118519871964,0.277064115484183,2.19488810440419,10.4205850571667,4.35690370829131,3.85669422744072,1.07633781413317,1.2813443329114,2.33125091275518,0.600182192168805,0.309157587715317,1.54584324027377,1.8611685633159,0.168776332241266,0.779496041289589,2.01947019395292,1.74894807420369,0.161646056818812,2.13005755509969,0.906768884048762,2.54340888465731,0,0,0,0.243947412259191,0,0.232387885739037,0.310983165046111,1.26160425437814,0.36497735907583,1.56449532329816,4.5026865673502,2.76269842704961,1.85747171212792,7.21879481669586,0.473227200159376,0.337169380156203,0.482022059766964,0.441175890929576,0.217879444092406,0,0.269662616320329,0,0,0,2.80483547606892,2.057870056657,4.41026134156626,0,0,0.590789906681404,0,0.245976877086227,0.514703430895577,0,0,0,0,0,0,0,0.34779121492523,0.939269553886573,0.866198686566443,0.462985512576611,0.190254152234598,0,0,0,0.234004265139238,0.297262324577456,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.285826432630578,0,0,0.22001485746285,2.71470603091333,7.15312891703765,2.535908257668,5.31876233169741,7.28052058379563,0.257207374262142,2.83698264046557,0.266422179016099,2.14466990487221,0.542621605391443,1.64648067356154,1.30294473717494,0.710783897485092,0.791951872933429,1.50719688529793,0,3.89894665610022,0,0,0,5.03212196532324,2.29723871668228,0,1.44781306667579,0.821905290201534,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,7.50255781589516,2.44138521329762,25.7883868298201,16.0586089917446,15.6125390883595,4.21709093973768,0,0,2.0694614258501,0.664225598535437,2.21243002250044,1.73767228936166,0.587403472388222,0.686286847621712,0,0,0,0,0,0.30239029332968,2.97729369382532,1.68808170616869,5.05188169979532,2.17836553734692,2.55853624533352,7.07757253031873,1.48418066444991,1.3878872442239,2.66342587969691,0.821271560138091,0,3.02146983995894,0.120859449591622,0.40101294060657,0,0.918515585316854,2.54927635209404,2.88473712910733,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,1.54227252690289,2.16757150035082,3.51182841698397,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.515205058238611,0.366277859273374,0.165018999841176,0,0,1.6068392984416,0.96670718292122,0.616194468458578,0.460511024178389,0.413509717453592,0.322260734604821,0.580066775656914,0.255679882248303,1.4245125703478,0,0,0,0.10115778085555,2.32422774648643,0.31481234683064,1.3940745403212,0.924100740528266,1.06461206063404,0.869932992075073,2.40921484835096,0.429374660225974,1.116475108079,2.53103539774981,6.67205678733387,1.79128453917934,0.42793898803392,0,3.13979456079692,2.51821440616641,1.92175920815238,2.00281083987667,0.404364963146632,1.58510321173008,1.26377536871694,3.90106991271672,1.21856744815642,2.11300293513511,2.32049849393576,1.27264888758341,0,1.10273068709225,3.98063385144732,1.75380354101505,0.578775534266688,0.655894752046633,2.63783490051515,2.16876448669825,0.845086807596724,0.717056761020258,5.50194629673478,3.21003946333125,0.354761064070598,1.89996871767898,1.97576935775941,0,0.699869440489966,0,0.670302275535787,0,0.564862804660675,0,1.68471475667626,0.443430153536676,0.459446800413919,0,0,0,0.238231775457789,0.411362273086194,0,0,0,1.06824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0,0,0,0,0,0,0,0,0.73254089635947,1.45632626099416,0,0.284136146806413,0,0,0,0,0,0.333926115068718,0,0,20.7217907781113,0.552567831062295,0,0,0,6.84287092855976,0,0,0,9.9629839693303,2.3948309234694,1.11136990144637,0.969332746095218,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.438770794307945,0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| ||
|short_description=p@chr20:35178050..35178086,- | |short_description=p@chr20:35178050..35178086,- | ||
}} | }} |
Latest revision as of 13:36, 28 July 2015
Short description: | p@chr20:35178050..35178086, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35178050..35178086, - |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 8.15e-13 | 43 |
smooth muscle myoblast | 8.15e-13 | 43 |
vascular associated smooth muscle cell | 9.19e-11 | 32 |
muscle cell | 1.37e-09 | 55 |
muscle precursor cell | 2.46e-09 | 58 |
myoblast | 2.46e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.46e-09 | 58 |
fibroblast | 6.65e-09 | 76 |
electrically responsive cell | 8.25e-08 | 61 |
electrically active cell | 8.25e-08 | 61 |
fat cell | 1.87e-07 | 15 |
preadipocyte | 3.39e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 5.86e-13 | 160 |
entire embryonic mesenchyme | 5.86e-13 | 160 |
trunk mesenchyme | 1.60e-12 | 122 |
epithelial vesicle | 3.33e-11 | 78 |
muscle tissue | 7.34e-11 | 64 |
musculature | 7.34e-11 | 64 |
musculature of body | 7.34e-11 | 64 |
dense mesenchyme tissue | 1.58e-10 | 73 |
somite | 3.73e-10 | 71 |
presomitic mesoderm | 3.73e-10 | 71 |
presumptive segmental plate | 3.73e-10 | 71 |
dermomyotome | 3.73e-10 | 71 |
trunk paraxial mesoderm | 3.73e-10 | 71 |
trunk | 6.79e-10 | 199 |
paraxial mesoderm | 7.23e-10 | 72 |
presumptive paraxial mesoderm | 7.23e-10 | 72 |
skeletal muscle tissue | 1.39e-09 | 62 |
striated muscle tissue | 1.39e-09 | 62 |
myotome | 1.39e-09 | 62 |
mesoderm | 1.90e-09 | 315 |
mesoderm-derived structure | 1.90e-09 | 315 |
presumptive mesoderm | 1.90e-09 | 315 |
multilaminar epithelium | 4.97e-09 | 83 |
smooth muscle tissue | 6.34e-08 | 15 |
omentum | 2.73e-07 | 6 |
peritoneum | 2.73e-07 | 6 |
abdominal cavity | 2.73e-07 | 6 |
visceral peritoneum | 2.73e-07 | 6 |