FFCP PHASE1:Hg19::chr16:730063..730127,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10273 | |EntrezGene=10273 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11427 | |HGNC=11427 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UNE7 | |UniProt=Q9UNE7 | ||
|association_with_transcript=0bp_to_NM_005861,uc002cit.2,uc002ciu.2,uc002civ.2,uc010bqz.2_5end | |association_with_transcript=0bp_to_NM_005861,uc002cit.2,uc002ciu.2,uc002civ.2,uc010bqz.2_5end | ||
|cluster_id=chr16:730063..730127,+ | |||
|description=CAGE_peak_2_at_STUB1_5end | |description=CAGE_peak_2_at_STUB1_5end | ||
|id=chr16:730063..730127,+ | |id=chr16:730063..730127,+ | ||
|ontology_enrichment_celltype=CL:0002321!8.59e-29!248;CL:0000220!8.19e-28!246;CL:0000066!2.60e-25!254;CL:0000548!6.95e-16!679;CL:0000004!6.95e-16!679;CL:0000255!6.95e-16!679;CL:0000012!5.29e-15!682;CL:0000221!1.02e-11!71;CL:0000144!5.01e-09!625;CL:0000183!1.05e-08!59;CL:0000133!1.35e-08!59;CL:0000055!3.77e-08!180;CL:0000222!6.03e-08!119;CL:0000333!1.12e-07!41;CL:0002076!1.41e-07!43;CL:0000223!1.59e-07!59;CL:0000393!5.65e-07!60;CL:0000211!5.65e-07!60;CL:0002371!5.90e-07!591;CL:0000003!6.60e-07!722;CL:1000497!9.67e-07!18;CL:0002518!9.67e-07!18 | |ontology_enrichment_celltype=CL:0002321!8.59e-29!248;CL:0000220!8.19e-28!246;CL:0000066!2.60e-25!254;CL:0000548!6.95e-16!679;CL:0000004!6.95e-16!679;CL:0000255!6.95e-16!679;CL:0000012!5.29e-15!682;CL:0000221!1.02e-11!71;CL:0000144!5.01e-09!625;CL:0000183!1.05e-08!59;CL:0000133!1.35e-08!59;CL:0000055!3.77e-08!180;CL:0000222!6.03e-08!119;CL:0000333!1.12e-07!41;CL:0002076!1.41e-07!43;CL:0000223!1.59e-07!59;CL:0000393!5.65e-07!60;CL:0000211!5.65e-07!60;CL:0002371!5.90e-07!591;CL:0000003!6.60e-07!722;CL:1000497!9.67e-07!18;CL:0002518!9.67e-07!18 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.90e-29,250;CL:0000066,1.34e-23,253;CL:0000221,1.09e-11,72;CL:0000133,2.03e-08,59;CL:0000222,4.06e-08,121;CL:0002076,1.05e-07,42;CL:0000333,1.15e-07,41;CL:0000223,1.70e-07,58;CL:0000393,2.23e-07,61;CL:0000211,2.23e-07,61;CL:0000187,4.07e-07,55;CL:0000680,4.19e-07,58;CL:0000056,4.19e-07,58;CL:0000355,4.19e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!2.07e-12!238;UBERON:0009142!2.07e-12!238;UBERON:0002100!1.17e-11!216;UBERON:0000119!1.35e-09!312;UBERON:0000481!1.91e-09!347;UBERON:0000483!2.87e-09!309;UBERON:0003914!7.53e-09!118;UBERON:0009569!8.32e-09!113;UBERON:0005256!1.14e-08!143;UBERON:0000475!1.35e-08!365;UBERON:0005085!5.93e-08!29;UBERON:0001048!1.26e-07!168;UBERON:0000486!2.41e-07!82;UBERON:0000490!2.88e-07!138;UBERON:0000922!4.66e-07!612;UBERON:0000468!4.69e-07!659 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.51e-11,199;UBERON:0003104,2.60e-11,160;UBERON:0009142,2.60e-11,160;UBERON:0000119,5.73e-09,309;UBERON:0007503,6.20e-09,78;UBERON:0000483,1.20e-08,306;UBERON:0009569,1.40e-08,112;UBERON:0003914,1.77e-08,117;UBERON:0000490,3.86e-08,148;UBERON:0001048,1.29e-07,160;UBERON:0005085,1.79e-07,31;UBERON:0000486,1.80e-07,83;UBERON:0005256,3.15e-07,122;UBERON:0002329,9.15e-07,71;UBERON:0003059,9.15e-07,71;UBERON:0007282,9.15e-07,71;UBERON:0004290,9.15e-07,71;UBERON:0009618,9.15e-07,71;UBERON:0001008,9.52e-07,48;UBERON:0006554,9.95e-07,47 | |||
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| ||
|short_description=p2@STUB1 | |short_description=p2@STUB1 | ||
}} | }} |
Latest revision as of 19:31, 17 September 2015
Short description: | p2@STUB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_STUB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_005861, uc002cit.2, uc002ciu.2, uc002civ.2, uc010bqz.2_5end |
EntrezGene: | STUB1 |
HGNC: | 11427 |
UniProt: | Q9UNE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.90e-29 | 250 |
epithelial cell | 1.34e-23 | 253 |
ectodermal cell | 1.09e-11 | 72 |
neurectodermal cell | 2.03e-08 | 59 |
mesodermal cell | 4.06e-08 | 121 |
endo-epithelial cell | 1.05e-07 | 42 |
migratory neural crest cell | 1.15e-07 | 41 |
endodermal cell | 1.70e-07 | 58 |
electrically responsive cell | 2.23e-07 | 61 |
electrically active cell | 2.23e-07 | 61 |
muscle cell | 4.07e-07 | 55 |
muscle precursor cell | 4.19e-07 | 58 |
myoblast | 4.19e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.19e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.51e-11 | 199 |
mesenchyme | 2.60e-11 | 160 |
entire embryonic mesenchyme | 2.60e-11 | 160 |
cell layer | 5.73e-09 | 309 |
epithelial vesicle | 6.20e-09 | 78 |
epithelium | 1.20e-08 | 306 |
subdivision of trunk | 1.40e-08 | 112 |
epithelial tube | 1.77e-08 | 117 |
unilaminar epithelium | 3.86e-08 | 148 |
primordium | 1.29e-07 | 160 |
ectodermal placode | 1.79e-07 | 31 |
multilaminar epithelium | 1.80e-07 | 83 |
trunk mesenchyme | 3.15e-07 | 122 |
somite | 9.15e-07 | 71 |
presomitic mesoderm | 9.15e-07 | 71 |
presumptive segmental plate | 9.15e-07 | 71 |
dermomyotome | 9.15e-07 | 71 |
trunk paraxial mesoderm | 9.15e-07 | 71 |
renal system | 9.52e-07 | 48 |
urinary system structure | 9.95e-07 | 47 |