FFCP PHASE1:Hg19::chr11:6640638..6640665,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:6640638..6640665,-
|short_description=p1@TPP1
|description=CAGE_peak_1_at_TPP1_5end
|association_with_transcript=0bp_to_ENST00000428886,ENST00000436873,EN...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1200 | |EntrezGene=1200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2073 | |HGNC=2073 | ||
|UniProt=E7EV34, | |TSSclassifier=strong | ||
|UniProt=E7EV34,O14773,E9PPA4,E9PME9 | |||
|association_with_transcript=0bp_to_ENST00000428886,ENST00000436873,ENST00000453338,ENST00000528571,ENST00000528657,ENST00000528917,ENST00000534644_5end | |||
|cluster_id=chr11:6640638..6640665,- | |||
|coexpression_cluster_id=C687 | |||
|description=CAGE_peak_1_at_TPP1_5end | |||
|id=chr11:6640638..6640665,- | |||
|ontology_enrichment_celltype=CL:0000766!1.02e-35!76;CL:0000839!1.66e-33!70;CL:0000557!2.04e-32!71;CL:0002194!4.63e-31!63;CL:0000576!4.63e-31!63;CL:0000040!4.63e-31!63;CL:0000559!4.63e-31!63;CL:0002009!4.00e-30!65;CL:0000763!3.74e-25!112;CL:0000049!3.74e-25!112;CL:0002057!1.14e-24!42;CL:0000860!1.18e-22!45;CL:0000738!2.56e-14!140;CL:0002031!4.09e-11!124;CL:0000037!7.11e-11!172;CL:0000566!7.11e-11!172;CL:0000988!7.98e-11!182;CL:0002032!3.29e-10!165;CL:0000837!3.29e-10!165;CL:0002087!9.18e-10!119;CL:0002320!1.55e-07!365;CL:0000134!5.08e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.02e-19;39!CL:0000234;1.02e-19;39!CL:0000860;2.15e-19;33!CL:0002057;2.15e-19;33!CL:0000576;2.56e-17;48!CL:0000766;4.56e-16;69!CL:0000763;2.71e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.41e-37,72;CL:0000839,2.07e-35,66;CL:0000557,3.12e-34,67;CL:0002194,4.87e-33,59;CL:0000576,4.87e-33,59;CL:0000040,4.87e-33,59;CL:0000559,4.87e-33,59;CL:0002009,5.59e-32,61;CL:0000473,8.22e-29,48;CL:0000234,8.22e-29,48;CL:0000763,5.20e-26,108;CL:0000049,5.20e-26,108;CL:0000860,1.14e-24,42;CL:0002057,1.14e-24,42;CL:0000738,1.06e-14,136;CL:0002031,1.88e-11,120;CL:0000037,4.17e-11,168;CL:0000988,6.14e-11,177;CL:0002032,1.95e-10,161;CL:0000837,1.95e-10,161;CL:0002087,4.51e-10,115;CL:0002320,1.34e-07,361;CL:0000134,4.40e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;5.72e-18;42!CL:0000049;6.80e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.15e-32!115;UBERON:0002193!2.31e-32!112;UBERON:0002371!4.41e-29!80;UBERON:0002390!4.76e-29!102;UBERON:0003061!4.76e-29!102;UBERON:0001474!1.85e-26!86;UBERON:0004765!1.52e-19!101;UBERON:0001434!1.52e-19!101;UBERON:0003081!2.16e-18!216;UBERON:0007023!6.67e-13!115;UBERON:0002204!2.10e-09!167;UBERON:0000062!1.54e-07!511;UBERON:0002384!8.47e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.84e-33,108;UBERON:0002405,6.72e-33,93;UBERON:0002371,1.64e-30,76;UBERON:0002390,3.82e-30,98;UBERON:0003061,3.82e-30,98;UBERON:0001474,1.16e-27,82;UBERON:0004765,8.27e-24,90;UBERON:0003081,3.29e-20,203;UBERON:0001434,3.96e-20,100;UBERON:0007023,8.41e-13,114;UBERON:0000926,5.40e-12,315;UBERON:0004120,5.40e-12,315;UBERON:0006603,5.40e-12,315;UBERON:0002204,6.19e-10,167;UBERON:0002384,7.44e-07,371 | |||
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| ||
|short_description=p1@TPP1 | |||
}} | }} |
Latest revision as of 15:24, 19 September 2015
Short description: | p1@TPP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TPP1_5end |
Coexpression cluster: | C687_CD14_Macrophage_Monocytederived_Dendritic_Endothelial_Pericytes_schwannoma |
Association with transcript: | 0bp_to_ENST00000428886, ENST00000436873, ENST00000453338, ENST00000528571, ENST00000528657, ENST00000528917, ENST00000534644_5end |
EntrezGene: | TPP1 |
HGNC: | 2073 |
UniProt: | E7EV34O14773E9PPA4E9PME9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.41e-37 | 72 |
myeloid lineage restricted progenitor cell | 2.07e-35 | 66 |
granulocyte monocyte progenitor cell | 3.12e-34 | 67 |
monopoietic cell | 4.87e-33 | 59 |
monocyte | 4.87e-33 | 59 |
monoblast | 4.87e-33 | 59 |
promonocyte | 4.87e-33 | 59 |
macrophage dendritic cell progenitor | 5.59e-32 | 61 |
defensive cell | 8.22e-29 | 48 |
phagocyte | 8.22e-29 | 48 |
myeloid cell | 5.20e-26 | 108 |
common myeloid progenitor | 5.20e-26 | 108 |
classical monocyte | 1.14e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-24 | 42 |
leukocyte | 1.06e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 1.88e-11 | 120 |
hematopoietic stem cell | 4.17e-11 | 168 |
hematopoietic cell | 6.14e-11 | 177 |
hematopoietic oligopotent progenitor cell | 1.95e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.95e-10 | 161 |
nongranular leukocyte | 4.51e-10 | 115 |
connective tissue cell | 1.34e-07 | 361 |
mesenchymal cell | 4.40e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.84e-33 | 108 |
immune system | 6.72e-33 | 93 |
bone marrow | 1.64e-30 | 76 |
hematopoietic system | 3.82e-30 | 98 |
blood island | 3.82e-30 | 98 |
bone element | 1.16e-27 | 82 |
skeletal element | 8.27e-24 | 90 |
lateral plate mesoderm | 3.29e-20 | 203 |
skeletal system | 3.96e-20 | 100 |
adult organism | 8.41e-13 | 114 |
mesoderm | 5.40e-12 | 315 |
mesoderm-derived structure | 5.40e-12 | 315 |
presumptive mesoderm | 5.40e-12 | 315 |
musculoskeletal system | 6.19e-10 | 167 |
connective tissue | 7.44e-07 | 371 |