FFCP PHASE1:Hg19::chr1:6845598..6845601,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23261 | |EntrezGene=23261 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18806 | |HGNC=18806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000461311_5end | |association_with_transcript=-10bp_to_ENST00000461311_5end | ||
|cluster_id=chr1:6845598..6845601,+ | |||
|description=CAGE_peak_5_at_CAMTA1_5end | |description=CAGE_peak_5_at_CAMTA1_5end | ||
|id=chr1:6845598..6845601,+ | |id=chr1:6845598..6845601,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.04e-09;18!CL:0000789;1.04e-09;18!CL:0002419;1.04e-09;18!CL:0000784;2.26e-08;3!CL:0000623;2.26e-08;3!CL:0000624;5.90e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.04e-09,18;CL:0000789,1.04e-09,18;CL:0002420,1.04e-09,18;CL:0002419,1.04e-09,18;CL:0000790,1.04e-09,18;CL:0000784,1.98e-08,3;CL:0000623,3.98e-08,3;CL:0000825,3.98e-08,3;CL:0000838,3.18e-07,52;CL:0000542,5.04e-07,53;CL:0000051,5.04e-07,53;CL:0000738,7.68e-07,136;CL:0000624,7.86e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.04e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.41e-13!115;UBERON:0000955!7.16e-13!69;UBERON:0006238!7.16e-13!69;UBERON:0001017!9.42e-13!82;UBERON:0001049!2.42e-12!57;UBERON:0005068!2.42e-12!57;UBERON:0006241!2.42e-12!57;UBERON:0007135!2.42e-12!57;UBERON:0002616!7.08e-12!59;UBERON:0005743!1.53e-11!86;UBERON:0002780!2.39e-11!41;UBERON:0001890!2.39e-11!41;UBERON:0006240!2.39e-11!41;UBERON:0003080!1.16e-10!42;UBERON:0003075!1.39e-10!86;UBERON:0007284!1.39e-10!86;UBERON:0001893!1.81e-10!34;UBERON:0002346!4.51e-10!90;UBERON:0001869!4.87e-10!32;UBERON:0002791!6.90e-10!33;UBERON:0002020!7.70e-10!34;UBERON:0003528!7.70e-10!34;UBERON:0000073!5.96e-09!94;UBERON:0001016!5.96e-09!94;UBERON:0003056!1.65e-08!61;UBERON:0002619!3.41e-08!22;UBERON:0000956!1.15e-07!25;UBERON:0000203!1.15e-07!25;UBERON:0000153!2.59e-07!129;UBERON:0007811!2.59e-07!129;UBERON:0001950!3.91e-07!20;UBERON:0000033!7.41e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.49e-13;32!UBERON:0002791;9.01e-13;32!UBERON:0000349;4.03e-12;5!UBERON:0001893;4.85e-12;34!UBERON:0002619;1.11e-10;22!UBERON:0003528;2.35e-10;34!UBERON:0002020;2.35e-10;34!UBERON:0002780;1.48e-09;41!UBERON:0001890;1.48e-09;41!UBERON:0002420;3.21e-09;9!UBERON:0007245;3.21e-09;9!UBERON:0010009;3.21e-09;9!UBERON:0010011;3.21e-09;9!UBERON:0000454;3.21e-09;9!UBERON:0000956;3.61e-09;25!UBERON:0000203;3.61e-09;25!UBERON:0001950;6.26e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.96e-15,32;UBERON:0001893,2.59e-14,34;UBERON:0002791,2.54e-13,32;UBERON:0000349,9.85e-13,5;UBERON:0003528,2.41e-12,34;UBERON:0002020,2.41e-12,34;UBERON:0002780,3.01e-11,41;UBERON:0001890,3.01e-11,41;UBERON:0003080,3.01e-11,41;UBERON:0006240,3.01e-11,41;UBERON:0001049,5.41e-11,56;UBERON:0005068,5.41e-11,56;UBERON:0006241,5.41e-11,56;UBERON:0007135,5.41e-11,56;UBERON:0002619,1.01e-10,22;UBERON:0000073,1.95e-10,53;UBERON:0002616,1.95e-10,53;UBERON:0000955,3.85e-10,68;UBERON:0006238,3.85e-10,68;UBERON:0002420,5.39e-10,9;UBERON:0007245,5.39e-10,9;UBERON:0010009,5.39e-10,9;UBERON:0010011,5.39e-10,9;UBERON:0000454,5.39e-10,9;UBERON:0001017,9.69e-10,81;UBERON:0003075,1.04e-09,82;UBERON:0007284,1.04e-09,82;UBERON:0000956,3.33e-09,25;UBERON:0000203,3.33e-09,25;UBERON:0002346,5.29e-09,86;UBERON:0003056,2.25e-08,61;UBERON:0001016,3.07e-08,89;UBERON:0001950,5.31e-08,20;UBERON:0010371,2.72e-07,104;UBERON:0007023,4.68e-07,114 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0.662794751455832,0.672325146451775,0.602694528023977,0,0.487932798790507,0.123121058076788,0.204000691244253,0.313454721478088,0.286235987131057,0.136874425072884,0.251085279189606,0.382067028739756,0.164201178899891,0.314843125254717,1.18009283054671,2.30297638858328,0.928896739896456,0,0,0.369754010166788,0.619737604642413,0.710846162437108,2.34880351467878,1.10799081706375,0,0.217010870715852,0.671746422719773,0.647787332037959,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0,0.512321413058201,0,0,0.645484683583826,0,0.564727018627814,0.818718450173537,0.224723484445085,0.612167784741805,0,0.639337125799041,0,0,0.852449501065388,0,0.56738522469114,0,0.502497330513487,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0,0.209658645508376,0.22465726229299,0,0,0.570025487482497,0.19891667719909,0,0,0,0,0.426730222566507,0.400395987036012,0.574752439954483,0,0,0.569212969109448,3.52342313622563,1.14681968437569,1.32171328579026,1.12101712596307,0.263384084775077,1.96709770113833,2.75107533924415,1.02800749499755,0.668745981562712,0.651844533267181,1.89379122293893,0,0,0.589211814949674,0.221533894583621,0.812411591295047,0.25618263945135,0.130059347559878,0.493313713811028,0,0.289803085735052,1.03800594213442,0.535081656179426,1.04535523804977,0.339928028092699,1.14966148080576,1.37450978193052,1.51811815211702,0.318565414324097,0,0.950452044448374,1.35517607169996,0.511946444617674,0,1.18388626022008,0,2.82249440514625,1.60464117470104,1.44824403882799,0,0,0.255725123687061,0,0.50133791063589,0.579386075843295,0,0,0.283604451492204,1.10864698731282,0.263504357079378,0.785874452986276,0,0,0,0.174129737299267,1.32957960518865,1.90792499444274,1.14398982156026,2.22874500797739,0,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,0.275118041940067,0,0.258416759169329,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0.357198913136319,0.22452937262617,0,0,0,0.366403487860815,0,3.87780264148325,0.436094052142534,0,0.506522046658319,0.132409180813219,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0.933633106199299,0.134710672069688,0.326923806226917,0.302714855289863,1.15235184896,0,0.624320153660641,0,0,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0.500474079487857,0,1.75591048352335,0.612975591598039,0.150238058906597,0.226864366320042,0.179389635688862,0.213557388818567,0.211931901159562,0,0.412210116953756,0,0.18611685633159,0,0.487185025805993,0.252433774244115,0.184099797284599,0.323292113637624,0,0.302256294682921,0.169560592310488,0,0,0,0.365921118388786,0.265059536642971,0,0.207322110030741,0.252320850875628,0,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0.392442930250692,0.769494313892781,0,0,0,1.47008711385542,0,0,0,0,0.368965315629341,0.171567810298526,0,0,0.201057944823262,0,0.651616610620649,0,1.44331342025273,0.231860809950154,0.352226082707465,0.288732895522148,0,0.570762456703795,1.58040879591855,0,0.246217006087397,0,0.297262324577456,0,0,0.283550194484773,0.358234090811393,0,0,1.47798971368783,0.880484340132261,0.829312462163088,1.00883967391873,0.88369703398466,0.317489471460845,0,0,0,0.205654985406647,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0.531876233169741,0,0.771622122786426,0,0,0.142977993658148,0.542621605391443,0.823240336780769,0,0.710783897485092,0.791951872933429,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0.358121926479791,0.112085143993527,1.18218456121156,1.2937654491571,2.43851768931522,0.254094624222463,1.30139853857622,0.773288812777695,0,0.637938751653163,0,0,0,0.24538298343828,0,0,0.415941723061614,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0.783204629850962,0,0.620304078368662,1.2942852049117,0.533637789017222,0,0,0.30239029332968,0.248107807818777,0.460385919864187,0.280660094433074,0.128139149255701,0,0.160853921143607,0,0,0.355123450626254,0.246381468041427,0,0.116210378459959,0,0.40101294060657,0,0,0.364182336013434,0.393373244878272,0.451199612907412,0.231046011313244,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0.27470839445503,0.330037999682352,0,0,0,0.096670718292122,0.308097234229289,0,0,0,0.145016693914229,0.170453254832202,0.267096106940212,0,0,0,0,1.39453664789186,0,0,0,0.532306030317022,0,0,0.286249773483982,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0,1.58510321173008,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0.75894634753143,0.349934720244983,0,0,0,0.376575203107117,0,1.68471475667626,0.443430153536676,0,0.507447609232169,0.764637207142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| ||
|short_description=p5@CAMTA1 | |short_description=p5@CAMTA1 | ||
}} | }} |
Latest revision as of 02:45, 19 September 2015
Short description: | p5@CAMTA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CAMTA1_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000461311_5end |
EntrezGene: | CAMTA1 |
HGNC: | 18806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.04e-09 | 18 |
alpha-beta T cell | 1.04e-09 | 18 |
immature T cell | 1.04e-09 | 18 |
mature T cell | 1.04e-09 | 18 |
immature alpha-beta T cell | 1.04e-09 | 18 |
plasmacytoid dendritic cell | 1.98e-08 | 3 |
natural killer cell | 3.98e-08 | 3 |
pro-NK cell | 3.98e-08 | 3 |
lymphoid lineage restricted progenitor cell | 3.18e-07 | 52 |
lymphocyte | 5.04e-07 | 53 |
common lymphoid progenitor | 5.04e-07 | 53 |
leukocyte | 7.68e-07 | 136 |
CD4-positive, alpha-beta T cell | 7.86e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.96e-15 | 32 |
telencephalon | 2.59e-14 | 34 |
regional part of telencephalon | 2.54e-13 | 32 |
limbic system | 9.85e-13 | 5 |
brain grey matter | 2.41e-12 | 34 |
gray matter | 2.41e-12 | 34 |
regional part of forebrain | 3.01e-11 | 41 |
forebrain | 3.01e-11 | 41 |
anterior neural tube | 3.01e-11 | 41 |
future forebrain | 3.01e-11 | 41 |
neural tube | 5.41e-11 | 56 |
neural rod | 5.41e-11 | 56 |
future spinal cord | 5.41e-11 | 56 |
neural keel | 5.41e-11 | 56 |
regional part of cerebral cortex | 1.01e-10 | 22 |
regional part of nervous system | 1.95e-10 | 53 |
regional part of brain | 1.95e-10 | 53 |
brain | 3.85e-10 | 68 |
future brain | 3.85e-10 | 68 |
basal ganglion | 5.39e-10 | 9 |
nuclear complex of neuraxis | 5.39e-10 | 9 |
aggregate regional part of brain | 5.39e-10 | 9 |
collection of basal ganglia | 5.39e-10 | 9 |
cerebral subcortex | 5.39e-10 | 9 |
central nervous system | 9.69e-10 | 81 |
neural plate | 1.04e-09 | 82 |
presumptive neural plate | 1.04e-09 | 82 |
cerebral cortex | 3.33e-09 | 25 |
pallium | 3.33e-09 | 25 |
neurectoderm | 5.29e-09 | 86 |
pre-chordal neural plate | 2.25e-08 | 61 |
nervous system | 3.07e-08 | 89 |
neocortex | 5.31e-08 | 20 |
ecto-epithelium | 2.72e-07 | 104 |
adult organism | 4.68e-07 | 114 |