FFCP PHASE1:Hg19::chr1:53480598..53480665,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6342 | |EntrezGene=6342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10606 | |HGNC=10606 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z3J1,E1B6W5,P22307,Q59HG9 | |UniProt=F2Z3J1,E1B6W5,P22307,Q59HG9 | ||
|association_with_transcript=0bp_to_ENST00000408941,ENST00000430330,ENST00000435345,ENST00000478274,ENST00000484100,ENST00000488965,ENST00000533119,NM_001007099,NM_001007100,NM_001007250_5end | |association_with_transcript=0bp_to_ENST00000408941,ENST00000430330,ENST00000435345,ENST00000478274,ENST00000484100,ENST00000488965,ENST00000533119,NM_001007099,NM_001007100,NM_001007250_5end | ||
|cluster_id=chr1:53480598..53480665,+ | |||
|description=CAGE_peak_1_at_SCP2_5end | |description=CAGE_peak_1_at_SCP2_5end | ||
|id=chr1:53480598..53480665,+ | |id=chr1:53480598..53480665,+ | ||
|ontology_enrichment_celltype=CL:0000048!2.95e-19!430;CL:0000723!4.44e-19!436;CL:0000034!2.35e-18!444;CL:0000134!5.33e-17!358;CL:0002320!1.69e-16!365;CL:0002031!1.56e-12!124;CL:0000219!3.12e-12!390;CL:0000037!3.44e-12!172;CL:0000566!3.44e-12!172;CL:0000738!1.38e-11!140;CL:0002032!1.68e-11!165;CL:0000837!1.68e-11!165;CL:0002087!8.58e-11!119;CL:0000839!3.64e-10!70;CL:0000557!7.99e-10!71;CL:0002009!1.25e-09!65;CL:0000988!1.98e-09!182;CL:0002194!4.10e-09!63;CL:0000576!4.10e-09!63;CL:0000040!4.10e-09!63;CL:0000559!4.10e-09!63;CL:0000763!8.53e-09!112;CL:0000049!8.53e-09!112;CL:0000766!5.29e-08!76;CL:0002371!7.91e-07!591 | |ontology_enrichment_celltype=CL:0000048!2.95e-19!430;CL:0000723!4.44e-19!436;CL:0000034!2.35e-18!444;CL:0000134!5.33e-17!358;CL:0002320!1.69e-16!365;CL:0002031!1.56e-12!124;CL:0000219!3.12e-12!390;CL:0000037!3.44e-12!172;CL:0000566!3.44e-12!172;CL:0000738!1.38e-11!140;CL:0002032!1.68e-11!165;CL:0000837!1.68e-11!165;CL:0002087!8.58e-11!119;CL:0000839!3.64e-10!70;CL:0000557!7.99e-10!71;CL:0002009!1.25e-09!65;CL:0000988!1.98e-09!182;CL:0002194!4.10e-09!63;CL:0000576!4.10e-09!63;CL:0000040!4.10e-09!63;CL:0000559!4.10e-09!63;CL:0000763!8.53e-09!112;CL:0000049!8.53e-09!112;CL:0000766!5.29e-08!76;CL:0002371!7.91e-07!591 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.15e-20,427;CL:0000723,4.83e-20,433;CL:0000034,2.71e-19,441;CL:0000134,8.50e-18,354;CL:0002320,2.83e-17,361;CL:0002031,2.84e-13,120;CL:0000219,7.23e-13,386;CL:0000037,9.33e-13,168;CL:0000738,3.21e-12,136;CL:0002032,4.64e-12,161;CL:0000837,4.64e-12,161;CL:0002087,1.80e-11,115;CL:0000839,3.81e-11,66;CL:0000557,9.17e-11,67;CL:0002009,1.27e-10,61;CL:0000988,3.12e-10,177;CL:0002194,4.38e-10,59;CL:0000576,4.38e-10,59;CL:0000040,4.38e-10,59;CL:0000559,4.38e-10,59;CL:0000763,2.13e-09,108;CL:0000049,2.13e-09,108;CL:0000766,9.45e-09,72;CL:0000473,1.47e-07,48;CL:0000234,1.47e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!4.88e-16!375;UBERON:0002371!4.56e-10!80;UBERON:0004765!6.75e-10!101;UBERON:0001434!6.75e-10!101;UBERON:0002390!2.83e-09!102;UBERON:0003061!2.83e-09!102;UBERON:0001474!2.94e-09!86;UBERON:0002204!1.44e-08!167;UBERON:0002193!2.85e-08!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.57e-17,371;UBERON:0004765,2.09e-11,90;UBERON:0002371,6.11e-11,76;UBERON:0001434,1.30e-10,100;UBERON:0001474,5.01e-10,82;UBERON:0002390,5.99e-10,98;UBERON:0003061,5.99e-10,98;UBERON:0002204,3.36e-09,167;UBERON:0002405,4.28e-09,93;UBERON:0002193,7.61e-09,108 | |||
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| ||
|short_description=p1@SCP2 | |short_description=p1@SCP2 | ||
}} | }} |
Latest revision as of 13:24, 18 September 2015
Short description: | p1@SCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000408941, ENST00000430330, ENST00000435345, ENST00000478274, ENST00000484100, ENST00000488965, ENST00000533119, NM_001007099, NM_001007100, NM_001007250_5end |
EntrezGene: | SCP2 |
HGNC: | 10606 |
UniProt: | F2Z3J1E1B6W5P22307Q59HG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.15e-20 | 427 |
somatic stem cell | 4.83e-20 | 433 |
stem cell | 2.71e-19 | 441 |
mesenchymal cell | 8.50e-18 | 354 |
connective tissue cell | 2.83e-17 | 361 |
hematopoietic lineage restricted progenitor cell | 2.84e-13 | 120 |
motile cell | 7.23e-13 | 386 |
hematopoietic stem cell | 9.33e-13 | 168 |
leukocyte | 3.21e-12 | 136 |
hematopoietic oligopotent progenitor cell | 4.64e-12 | 161 |
hematopoietic multipotent progenitor cell | 4.64e-12 | 161 |
nongranular leukocyte | 1.80e-11 | 115 |
myeloid lineage restricted progenitor cell | 3.81e-11 | 66 |
granulocyte monocyte progenitor cell | 9.17e-11 | 67 |
macrophage dendritic cell progenitor | 1.27e-10 | 61 |
hematopoietic cell | 3.12e-10 | 177 |
monopoietic cell | 4.38e-10 | 59 |
monocyte | 4.38e-10 | 59 |
monoblast | 4.38e-10 | 59 |
promonocyte | 4.38e-10 | 59 |
myeloid cell | 2.13e-09 | 108 |
common myeloid progenitor | 2.13e-09 | 108 |
myeloid leukocyte | 9.45e-09 | 72 |
defensive cell | 1.47e-07 | 48 |
phagocyte | 1.47e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.57e-17 | 371 |
skeletal element | 2.09e-11 | 90 |
bone marrow | 6.11e-11 | 76 |
skeletal system | 1.30e-10 | 100 |
bone element | 5.01e-10 | 82 |
hematopoietic system | 5.99e-10 | 98 |
blood island | 5.99e-10 | 98 |
musculoskeletal system | 3.36e-09 | 167 |
immune system | 4.28e-09 | 93 |
hemolymphoid system | 7.61e-09 | 108 |