FFCP PHASE1:Hg19::chr16:29231538..29231546,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AK126407_5end | |association_with_transcript=0bp_to_AK126407_5end | ||
|cluster_id=chr16:29231538..29231546,- | |||
|description=CAGE_peak_1_at_AK126407_5end | |description=CAGE_peak_1_at_AK126407_5end | ||
|id=chr16:29231538..29231546,- | |id=chr16:29231538..29231546,- | ||
|ontology_enrichment_celltype=CL:0000055!5.96e-16!180;CL:0000187!3.35e-13!54;CL:0000183!8.26e-13!59;CL:0000680!3.71e-12!57;CL:0000056!3.71e-12!57;CL:0000355!3.71e-12!57;CL:0000393!3.18e-11!60;CL:0000211!3.18e-11!60;CL:0000048!3.52e-11!430;CL:0000723!9.82e-11!436;CL:0000034!3.68e-10!444;CL:0000192!7.26e-10!42;CL:0000514!7.26e-10!42;CL:0002570!1.78e-09!8;CL:0000499!9.24e-08!27;CL:0002371!1.36e-07!591;CL:0000708!4.55e-07!3;CL:0000135!7.72e-07!3;CL:0000386!7.72e-07!3;CL:0000388!7.72e-07!3 | |ontology_enrichment_celltype=CL:0000055!5.96e-16!180;CL:0000187!3.35e-13!54;CL:0000183!8.26e-13!59;CL:0000680!3.71e-12!57;CL:0000056!3.71e-12!57;CL:0000355!3.71e-12!57;CL:0000393!3.18e-11!60;CL:0000211!3.18e-11!60;CL:0000048!3.52e-11!430;CL:0000723!9.82e-11!436;CL:0000034!3.68e-10!444;CL:0000192!7.26e-10!42;CL:0000514!7.26e-10!42;CL:0002570!1.78e-09!8;CL:0000499!9.24e-08!27;CL:0002371!1.36e-07!591;CL:0000708!4.55e-07!3;CL:0000135!7.72e-07!3;CL:0000386!7.72e-07!3;CL:0000388!7.72e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002570;1.77e-24;8!CL:0000708;1.21e-11;3!CL:0000135;4.19e-11;3!CL:0000388;4.19e-11;3!CL:0002379;1.60e-09;1!CL:0000499;1.82e-09;28!CL:0000511;5.97e-09;1!CL:0002625;5.97e-09;1!CL:0000216;5.97e-09;1!CL:0000327;1.64e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,1.04e-24,8;CL:0000708,1.27e-11,3;CL:0000135,4.66e-11,3;CL:0000388,4.66e-11,3;CL:0002379,1.60e-09,1;CL:0000499,2.16e-09,28;CL:0000511,3.31e-09,1;CL:0002625,3.31e-09,1;CL:0000216,3.31e-09,1;CL:0000327,1.96e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!4.61e-07!14 | |ontology_enrichment_disease=DOID:2394!4.61e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3620;1.60e-09;1!DOID:3565;1.60e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,1.60e-09,1;DOID:3565,1.60e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001134!5.85e-12!61;UBERON:0002036!5.85e-12!61;UBERON:0003082!5.85e-12!61;UBERON:0002385!2.30e-11!63;UBERON:0001015!2.30e-11!63;UBERON:0000383!2.30e-11!63;UBERON:0004290!1.43e-09!70;UBERON:0000914!1.11e-08!83;UBERON:0002329!1.11e-08!83;UBERON:0003077!1.11e-08!83;UBERON:0003059!1.11e-08!83;UBERON:0007282!1.11e-08!83;UBERON:0009618!1.11e-08!83;UBERON:0007285!1.11e-08!83;UBERON:0000486!3.86e-08!82;UBERON:0003210!4.55e-07!3;UBERON:0000043!7.72e-07!3 | |ontology_enrichment_uberon=UBERON:0001134!5.85e-12!61;UBERON:0002036!5.85e-12!61;UBERON:0003082!5.85e-12!61;UBERON:0002385!2.30e-11!63;UBERON:0001015!2.30e-11!63;UBERON:0000383!2.30e-11!63;UBERON:0004290!1.43e-09!70;UBERON:0000914!1.11e-08!83;UBERON:0002329!1.11e-08!83;UBERON:0003077!1.11e-08!83;UBERON:0003059!1.11e-08!83;UBERON:0007282!1.11e-08!83;UBERON:0009618!1.11e-08!83;UBERON:0007285!1.11e-08!83;UBERON:0000486!3.86e-08!82;UBERON:0003210!4.55e-07!3;UBERON:0000043!7.72e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;6.15e-14;14!UBERON:0003210;1.21e-11;3!UBERON:0007846;4.19e-11;3!UBERON:0000043;4.19e-11;3!UBERON:0007845;4.19e-11;3!UBERON:0001136;5.97e-09;1!UBERON:0001343;5.97e-09;1!UBERON:0004910;5.97e-09;1!UBERON:0004813;5.97e-09;1!UBERON:0005284;5.31e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,4.57e-14,14;UBERON:0003210,1.27e-11,3;UBERON:0007846,4.66e-11,3;UBERON:0000043,4.66e-11,3;UBERON:0007845,4.66e-11,3;UBERON:0001136,3.31e-09,1;UBERON:0001343,3.31e-09,1;UBERON:0004910,3.31e-09,1;UBERON:0005154,3.31e-09,1;UBERON:0005295,3.31e-09,1;UBERON:0004813,3.31e-09,1;UBERON:0005297,3.31e-09,1;UBERON:0005294,3.31e-09,1;UBERON:0010141,3.31e-09,1;UBERON:0005891,3.31e-09,1;UBERON:0005284,4.85e-07,5 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,1.00267582127178,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.264818361626438,0,0.354668382198357,0,0,0,0,0,0,0.605429710579726,1.15235184896,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,1.43723628363248,0,0,0,0,0,0.45071417671979,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,2.35475277125258,0.43596006883328,3.2268845761218,0.129271715757778,3.57656445851882,0,0.531876233169741,1.04007436911366,0,0,0,0.857867961948885,0.542621605391443,0,0,0.710783897485092,0,0,0,0,0,0,0,0.479249710983165,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0.434418072340414,0,0.686286847621712,0,0,0,0,0,0,0,0.306923946576125,0.561320188866147,1.28139149255701,0,0,0,0.154209693802656,0.355123450626254,0.410635780069046,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.290012154876366,0,0.15350367472613,0,1.18162269355101,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,1.48863347743867,0,0,0.511795582622668,0,0.318203247925937,0,0.179872457583315,1.09814811894422,0.353437207037059,0.202182481573316,0,0,0.48763373908959,0,2.11300293513511,0,0.707027159768564,0,0.551365343546124,0,0,0.578775534266688,1.9676842561399,0,0,0,0.143411352204052,0,0,0.709522128141196,1.26664581178598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615602068030377,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41111385305795,0,0,1.49254802886874,1.40227985908335,0.554805861502613,0.189403005275089,0.50313580350515,0,0,1.05861646634267,0.621748802331122,0,0,0,0.155262956876259,0.829412415681711,0.265841714557995,0.521745061811734,0.150257608997218,0,0,0.727394636810238,0,0.464033759878494,0.398095888698616,0,3.43395705182793,4.37774335395695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596748666348824,0.526472298444801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40513409419076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598505450025,1.38652688589425,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,0,0 | |phase1_expression=0.363356758541113,0.428201047781966,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,1.00267582127178,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.264818361626438,0,0.354668382198357,0,0,0,0,0,0,0.605429710579726,1.15235184896,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,1.43723628363248,0,0,0,0,0,0.45071417671979,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,2.35475277125258,0.43596006883328,3.2268845761218,0.129271715757778,3.57656445851882,0,0.531876233169741,1.04007436911366,0,0,0,0.857867961948885,0.542621605391443,0,0,0.710783897485092,0,0,0,0,0,0,0,0.479249710983165,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0.434418072340414,0,0.686286847621712,0,0,0,0,0,0,0,0.306923946576125,0.561320188866147,1.28139149255701,0,0,0,0.154209693802656,0.355123450626254,0.410635780069046,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.290012154876366,0,0.15350367472613,0,1.18162269355101,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,1.48863347743867,0,0,0.511795582622668,0,0.318203247925937,0,0.179872457583315,1.09814811894422,0.353437207037059,0.202182481573316,0,0,0.48763373908959,0,2.11300293513511,0,0.707027159768564,0,0.551365343546124,0,0,0.578775534266688,1.9676842561399,0,0,0,0.143411352204052,0,0,0.709522128141196,1.26664581178598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615602068030377,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41111385305795,0,0,1.49254802886874,1.40227985908335,0.554805861502613,0.189403005275089,0.50313580350515,0,0,1.05861646634267,0.621748802331122,0,0,0,0.155262956876259,0.829412415681711,0.265841714557995,0.521745061811734,0.150257608997218,0,0,0.727394636810238,0,0.464033759878494,0.398095888698616,0,3.43395705182793,4.37774335395695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596748666348824,0.526472298444801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40513409419076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598505450025,1.38652688589425,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,0,0 | ||
|short_description=p1@AK126407 | |short_description=p1@AK126407 | ||
}} | }} |
Latest revision as of 07:49, 25 July 2015
Short description: | p1@AK126407 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK126407_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AK126407_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 1.04e-24 | 8 |
leptomeningeal cell | 1.27e-11 | 3 |
fibrocyte | 4.66e-11 | 3 |
tendon cell | 4.66e-11 | 3 |
meningothelial cell | 1.60e-09 | 1 |
stromal cell | 2.16e-09 | 28 |
androgen binding protein secreting cell | 3.31e-09 | 1 |
seminiferous tubule epithelial cell | 3.31e-09 | 1 |
Sertoli cell | 3.31e-09 | 1 |
extracellular matrix secreting cell | 1.96e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 4.57e-14 | 14 |
blood-cerebrospinal fluid barrier | 1.27e-11 | 3 |
dense regular connective tissue | 4.66e-11 | 3 |
tendon | 4.66e-11 | 3 |
regular connective tissue | 4.66e-11 | 3 |
mesothelium | 3.31e-09 | 1 |
seminiferous tubule of testis | 3.31e-09 | 1 |
epithelium of male gonad | 3.31e-09 | 1 |
epithelial cord | 3.31e-09 | 1 |
sex cord | 3.31e-09 | 1 |
seminiferous tubule epithelium | 3.31e-09 | 1 |
testis sex cord | 3.31e-09 | 1 |
genital ridge | 3.31e-09 | 1 |
primitive sex cord of indifferent gonad | 3.31e-09 | 1 |
coelomic epithelium | 3.31e-09 | 1 |
brain vasculature | 4.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 1.60e-09 | 1 |
meningioma | 1.60e-09 | 1 |