FFCP PHASE1:Hg19::chr1:25876368..25876381,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26119 | |EntrezGene=26119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18640 | |HGNC=18640 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-70bp_to_ENST00000485476_5end | |association_with_transcript=-70bp_to_ENST00000485476_5end | ||
|cluster_id=chr1:25876368..25876381,+ | |||
|coexpression_cluster_id=C169 | |||
|description=CAGE_peak_6_at_LDLRAP1_5end | |description=CAGE_peak_6_at_LDLRAP1_5end | ||
|id=chr1:25876368..25876381,+ | |id=chr1:25876368..25876381,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.42e-23!53;CL:0000051!1.42e-23!53;CL:0000838!5.15e-22!52;CL:0002032!2.71e-20!165;CL:0000837!2.71e-20!165;CL:0000037!5.91e-20!172;CL:0000566!5.91e-20!172;CL:0000988!3.80e-18!182;CL:0002087!1.41e-15!119;CL:0000084!4.49e-15!25;CL:0000827!4.49e-15!25;CL:0002031!1.54e-12!124;CL:0000738!7.56e-12!140;CL:0000945!3.64e-10!24;CL:0000826!3.64e-10!24;CL:0000791!4.16e-09!18;CL:0000789!4.16e-09!18;CL:0002420!4.16e-09!18;CL:0002419!4.16e-09!18;CL:0000790!4.16e-09!18 | |ontology_enrichment_celltype=CL:0000542!1.42e-23!53;CL:0000051!1.42e-23!53;CL:0000838!5.15e-22!52;CL:0002032!2.71e-20!165;CL:0000837!2.71e-20!165;CL:0000037!5.91e-20!172;CL:0000566!5.91e-20!172;CL:0000988!3.80e-18!182;CL:0002087!1.41e-15!119;CL:0000084!4.49e-15!25;CL:0000827!4.49e-15!25;CL:0002031!1.54e-12!124;CL:0000738!7.56e-12!140;CL:0000945!3.64e-10!24;CL:0000826!3.64e-10!24;CL:0000791!4.16e-09!18;CL:0000789!4.16e-09!18;CL:0002420!4.16e-09!18;CL:0002419!4.16e-09!18;CL:0000790!4.16e-09!18 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.42e-17;24!CL:0000542;9.39e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.07e-17,24;CL:0000826,2.07e-17,24;CL:0000838,2.87e-15,52;CL:0000542,5.66e-15,53;CL:0000051,5.66e-15,53;CL:0002032,1.44e-07,161;CL:0000837,1.44e-07,161;CL:0000037,3.20e-07,168;CL:0000988,8.19e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;9.39e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!9.32e-29!51;DOID:0060083!9.32e-29!51;DOID:1240!2.30e-21!39;DOID:8692!7.79e-16!31;DOID:0060058!4.36e-08!10;DOID:0050686!2.67e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:2355;2.66e-18;1!DOID:630;9.48e-18;1!DOID:0050177;9.48e-18;1!DOID:0050427;9.48e-18;1!DOID:74;7.97e-10;2!DOID:0060058;1.05e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,2.66e-18,1;DOID:630,1.22e-17,1;DOID:0050177,1.22e-17,1;DOID:0050427,1.22e-17,1;DOID:74,7.98e-10,2;DOID:0060058,1.09e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.04e-10!7;UBERON:0002106!3.19e-07!3;UBERON:0004854!3.19e-07!3;UBERON:0009034!3.19e-07!3;UBERON:0002095!3.19e-07!3;UBERON:0004782!3.19e-07!3;UBERON:0003281!3.19e-07!3;UBERON:0009664!3.19e-07!3;UBERON:0002296!3.19e-07!3;UBERON:0005602!3.19e-07!3;UBERON:0001179!3.19e-07!3;UBERON:0006293!3.19e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p6@LDLRAP1 | |short_description=p6@LDLRAP1 | ||
}} | }} |
Latest revision as of 03:32, 17 September 2015
Short description: | p6@LDLRAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LDLRAP1_5end |
Coexpression cluster: | C169_hereditary_adult_gall_lymphangiectasia_chronic_b_choriocarcinoma |
Association with transcript: | -70bp_to_ENST00000485476_5end |
EntrezGene: | LDLRAP1 |
HGNC: | 18640 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.07e-17 | 24 |
pro-B cell | 2.07e-17 | 24 |
lymphoid lineage restricted progenitor cell | 2.87e-15 | 52 |
lymphocyte | 5.66e-15 | 53 |
common lymphoid progenitor | 5.66e-15 | 53 |
hematopoietic oligopotent progenitor cell | 1.44e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-07 | 161 |
hematopoietic stem cell | 3.20e-07 | 168 |
hematopoietic cell | 8.19e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
anemia | 2.66e-18 | 1 |
genetic disease | 1.22e-17 | 1 |
monogenic disease | 1.22e-17 | 1 |
xeroderma pigmentosum | 1.22e-17 | 1 |
hematopoietic system disease | 7.98e-10 | 2 |
lymphoma | 1.09e-07 | 10 |