FFCP PHASE1:Hg19::chr1:245027971..245027998,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:245027971..245027998,+ | |||
|coexpression_cluster_id=C1558 | |||
|description=CAGE_peak_at_chr1:245027971..245027998,+ | |description=CAGE_peak_at_chr1:245027971..245027998,+ | ||
|id=chr1:245027971..245027998,+ | |id=chr1:245027971..245027998,+ | ||
|ontology_enrichment_celltype=CL:0000738!4.78e-29!140;CL:0000037!5.64e-25!172;CL:0000566!5.64e-25!172;CL:0002031!7.12e-25!124;CL:0000988!2.20e-24!182;CL:0002087!1.65e-23!119;CL:0002032!2.33e-23!165;CL:0000837!2.33e-23!165;CL:0000838!3.85e-19!52;CL:0000542!7.17e-19!53;CL:0000051!7.17e-19!53;CL:0000791!7.96e-11!18;CL:0000789!7.96e-11!18;CL:0002420!7.96e-11!18;CL:0002419!7.96e-11!18;CL:0000790!7.96e-11!18;CL:0000766!1.09e-09!76;CL:0000084!1.74e-09!25;CL:0000827!1.74e-09!25;CL:0000945!3.65e-09!24;CL:0000826!3.65e-09!24;CL:0000236!7.19e-09!14;CL:0000625!4.08e-08!11;CL:0000763!5.27e-08!112;CL:0000049!5.27e-08!112;CL:0000557!6.99e-08!71;CL:0000839!8.05e-08!70;CL:0000860!2.87e-07!45;CL:0002057!4.21e-07!42;CL:0002009!8.54e-07!65 | |ontology_enrichment_celltype=CL:0000738!4.78e-29!140;CL:0000037!5.64e-25!172;CL:0000566!5.64e-25!172;CL:0002031!7.12e-25!124;CL:0000988!2.20e-24!182;CL:0002087!1.65e-23!119;CL:0002032!2.33e-23!165;CL:0000837!2.33e-23!165;CL:0000838!3.85e-19!52;CL:0000542!7.17e-19!53;CL:0000051!7.17e-19!53;CL:0000791!7.96e-11!18;CL:0000789!7.96e-11!18;CL:0002420!7.96e-11!18;CL:0002419!7.96e-11!18;CL:0000790!7.96e-11!18;CL:0000766!1.09e-09!76;CL:0000084!1.74e-09!25;CL:0000827!1.74e-09!25;CL:0000945!3.65e-09!24;CL:0000826!3.65e-09!24;CL:0000236!7.19e-09!14;CL:0000625!4.08e-08!11;CL:0000763!5.27e-08!112;CL:0000049!5.27e-08!112;CL:0000557!6.99e-08!71;CL:0000839!8.05e-08!70;CL:0000860!2.87e-07!45;CL:0002057!4.21e-07!42;CL:0002009!8.54e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.22e-27;18!CL:0000789;2.22e-27;18!CL:0002419;2.22e-27;18!CL:0000625;7.49e-19;11!CL:0000084;2.92e-18;25!CL:0000542;2.14e-17;53!CL:0000236;1.19e-16;13!CL:0000624;4.34e-12;6!CL:0000945;2.88e-09;24!CL:0002087;1.21e-08;104!CL:0000094;1.29e-08;8!CL:0002393;4.60e-08;6!CL:0002397;4.60e-08;6!CL:0000898;3.76e-07;3!CL:0000738;4.57e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.13e-37,136;CL:0000838,4.86e-30,52;CL:0002031,1.06e-29,120;CL:0000542,2.82e-29,53;CL:0000051,2.82e-29,53;CL:0000037,9.44e-28,168;CL:0000791,1.16e-27,18;CL:0000789,1.16e-27,18;CL:0002420,1.16e-27,18;CL:0002419,1.16e-27,18;CL:0000790,1.16e-27,18;CL:0002087,2.91e-27,115;CL:0002032,3.17e-27,161;CL:0000837,3.17e-27,161;CL:0000988,2.01e-25,177;CL:0000625,5.46e-19,11;CL:0000084,1.86e-18,25;CL:0000827,1.86e-18,25;CL:0000236,2.09e-15,14;CL:0002393,7.35e-13,9;CL:0002397,7.35e-13,9;CL:0000624,2.96e-12,6;CL:0000766,4.06e-10,72;CL:0000945,2.45e-09,24;CL:0000826,2.45e-09,24;CL:0000134,4.83e-09,354;CL:0000094,1.08e-08,8;CL:0002320,1.56e-08,361;CL:0000219,4.37e-08,386;CL:0000034,2.12e-07,441;CL:0000898,4.02e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.22e-27;18!CL:0000051;2.14e-17;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.35e-12!102;UBERON:0003061!7.35e-12!102;UBERON:0002193!7.95e-11!112;UBERON:0002371!3.53e-09!80;UBERON:0002405!8.96e-08!115;UBERON:0001474!1.51e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.81e-08,371;UBERON:0002390,5.37e-08,98;UBERON:0003061,5.37e-08,98;UBERON:0002371,4.60e-07,76 | |||
|phase1_expression=0,0,0,0,0,0,0,0,1.30592814099919,0,0.697801167972428,0.873765488520689,0.791300934685361,0,0.331397375727916,0,0,0,0,0.861847406537515,1.02000345622126,1.56727360739044,0.286235987131057,0.273748850145768,0.376627918784408,0.916960868975415,0.246301768349837,0.944529375764151,3.54027849164014,3.45446458287491,2.63187409637329,1.83884244895785,0.90361775633475,0,0.0774672005803016,0.284338464974843,0.880801318004542,5.53995408531877,0.401088894940283,1.51907609501096,0.671746422719773,0.32389366601898,0.257575567634187,0.872389432677388,0.377875943688809,0.727752183563449,0.232429036905685,0.822335776043652,0,0,0,0,0.344745680736619,0,1.35426486594342,0.752969358170419,0.818718450173537,0.898893937780338,2.14258724659632,0.641858054152187,1.27867425159808,0,0.398927315243264,0,0.290209238628584,0,0.622822248995575,0.502497330513487,0.521482918420201,0.217188844705117,0.605399502633369,0.368277635987565,0.632924774881769,2.95757400836718,2.76385589954557,4.61249020118427,2.47122988522289,2.55300717830561,1.28580469357664,1.99508920618874,2.38700012638908,3.65328307529268,5.27988733383968,3.27683166757279,8.89509253863555,2.98711155796555,2.80277190925209,5.17277195959035,3.96626923670917,4.77026877267682,2.27685187643779,1.76171156811282,2.6759125968766,3.96513985737078,1.12101712596307,1.05353633910031,4.52432471261816,1.96505381374582,4.31763147898969,1.17030546773475,3.58514493296949,6.62826928028627,3.89653456815823,0.334231370655521,5.30290633454707,3.1014745241707,5.41607727530031,0.640456598628376,1.43065282315866,0.328875809207352,1.38175008892924,1.44901542867526,5.93146252648242,4.28065324943541,3.1360657141493,0.679856056185397,4.21542542962113,6.18529401868734,3.79529538029254,3.18565414324097,1.30216690771284,4.75226022224187,3.01150238155546,5.37543766848557,1.24930726552346,1.65744076430812,2.46338399076314,4.03213486449465,1.87208137048455,2.89648807765598,0,0,0,0,0.50133791063589,0,0,0,0.472674085820339,0,0.263504357079378,0.523916301990851,0.364295288292542,0,0,0,0.132957960518865,1.90792499444274,0.571994910780128,2.97166001063652,0.596287222100115,0.860234595106124,0.347140501607594,0,0.838998872419812,0.275118041940067,0.208994966536811,0.258416759169329,0,0.66944122552934,0.402829317109147,0.760272105718513,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0.366403487860815,0,3.87780264148325,0.436094052142534,0,0,0.264818361626438,0,0,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0.908144565869588,0,0.468642863667593,0.312160076830321,0,0,0.469737994575059,0.323745888736263,0.140450806702248,0,0.122834317311768,0.206651562351531,1.18800285728205,0.247266929278557,0.910161361938026,0,0,0,0,0.438977620880838,0.612975591598039,0,0.113432183160021,0,0.427114777637135,0.211931901159562,0.600182192168805,0.103052529238439,0.257640540045629,0.930584281657949,0.506328996723799,0.389748020644795,0.757301322732344,0.276149695926898,0.80823028409406,0,0,0.169560592310488,0,0,0,0.487894824518382,0.530119073285941,0.464775771478074,0.10366105501537,0,0,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0.474541238222193,0.943819157121151,0.588664395376038,0.38474715694639,0,2.80483547606892,0.8231480226628,1.47008711385542,0,0,0,0,0.737930631258681,0,0.109750285408626,1.1240175325762,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0.570762456703795,3.95102198979638,2.57545848628462,0.492434012174795,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0,0,0,0.492663237895943,0.44024217006613,1.86595303986695,3.45887888200707,2.90357596880674,0.126995788584338,0.381988425558278,2.34434894420094,0,0.616964956219941,0,0,0.448524337381443,0.87192013766656,0.07333828582095,0,7.15312891703765,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,1.50677127429638,0,0.239624855491583,0,1.42636905040718,0.144781306667579,0.205476322550383,0,0,3.34952292343276,2.80315847317372,3.33691894327346,0.254094624222463,0,0,0.502548796003046,2.55175500661265,0,2.99161459204025,4.55857064779639,0.24538298343828,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0.521301686808497,0.783204629850962,0.343143423810856,0.82707210449155,2.15714200818617,0.320182673410333,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0.321707842287215,1.48418066444991,0,0.177561725313127,0,0,0.116210378459959,0.362578348774867,0.40101294060657,0,0.114814448164607,0,0.131124414959424,0.451199612907412,0,0,0,0,1.13733384070897,0,0,1.54227252690289,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0.784306353074702,0,0.328014645699706,0,0.309123034943167,0.183138929636687,0,0,0,0,0.193341436584244,0.308097234229289,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.426133137080504,0.178064071293475,0.165284915360978,0.384380134730212,0.255225424989168,0,0,0,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0,0,0,0,0.255897791311334,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|short_description=p@chr1:245027971..245027998,+ | |short_description=p@chr1:245027971..245027998,+ | ||
}} | }} |
Latest revision as of 06:00, 28 July 2015
Short description: | p@chr1:245027971..245027998, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:245027971..245027998, + |
Coexpression cluster: | C1558_CD19_CD8_CD4_Mesenchymal_MCF7_CD14CD16_CD14 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.13e-37 | 136 |
lymphoid lineage restricted progenitor cell | 4.86e-30 | 52 |
hematopoietic lineage restricted progenitor cell | 1.06e-29 | 120 |
lymphocyte | 2.82e-29 | 53 |
common lymphoid progenitor | 2.82e-29 | 53 |
hematopoietic stem cell | 9.44e-28 | 168 |
mature alpha-beta T cell | 1.16e-27 | 18 |
alpha-beta T cell | 1.16e-27 | 18 |
immature T cell | 1.16e-27 | 18 |
mature T cell | 1.16e-27 | 18 |
immature alpha-beta T cell | 1.16e-27 | 18 |
nongranular leukocyte | 2.91e-27 | 115 |
hematopoietic oligopotent progenitor cell | 3.17e-27 | 161 |
hematopoietic multipotent progenitor cell | 3.17e-27 | 161 |
hematopoietic cell | 2.01e-25 | 177 |
CD8-positive, alpha-beta T cell | 5.46e-19 | 11 |
T cell | 1.86e-18 | 25 |
pro-T cell | 1.86e-18 | 25 |
B cell | 2.09e-15 | 14 |
intermediate monocyte | 7.35e-13 | 9 |
CD14-positive, CD16-positive monocyte | 7.35e-13 | 9 |
CD4-positive, alpha-beta T cell | 2.96e-12 | 6 |
myeloid leukocyte | 4.06e-10 | 72 |
lymphocyte of B lineage | 2.45e-09 | 24 |
pro-B cell | 2.45e-09 | 24 |
mesenchymal cell | 4.83e-09 | 354 |
granulocyte | 1.08e-08 | 8 |
connective tissue cell | 1.56e-08 | 361 |
motile cell | 4.37e-08 | 386 |
stem cell | 2.12e-07 | 441 |
naive T cell | 4.02e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.81e-08 | 371 |
hematopoietic system | 5.37e-08 | 98 |
blood island | 5.37e-08 | 98 |
bone marrow | 4.60e-07 | 76 |