FFCP PHASE1:Hg19::chr11:61129335..61129364,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:61129335..61129364,-
|short_description=p1@CYBASC3
|description=CAGE_peak_1_at_CYBASC3_5end
|association_with_transcript=0bp_to_ENST00000539128,ENST000005...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=220002 | |EntrezGene=220002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23014 | |HGNC=23014 | ||
|UniProt=F5H5Y9, | |TSSclassifier=strong | ||
|UniProt=F5H5Y9,F5H684,F5GWH8 | |||
|association_with_transcript=0bp_to_ENST00000539128,ENST00000542411,ENST00000545361,ENST00000546151_5end | |||
|cluster_id=chr11:61129335..61129364,- | |||
|description=CAGE_peak_1_at_CYBASC3_5end | |||
|id=chr11:61129335..61129364,- | |||
|ontology_enrichment_celltype=CL:0002371!2.98e-43!591;CL:0000144!1.61e-36!625;CL:0000012!6.74e-35!682;CL:0000548!8.74e-35!679;CL:0000004!8.74e-35!679;CL:0000255!8.74e-35!679;CL:0000063!2.73e-29!578;CL:0000003!5.62e-28!722;CL:0000723!4.71e-26!436;CL:0000048!9.43e-26!430;CL:0002320!8.32e-24!365;CL:0000034!1.81e-23!444;CL:0000134!6.54e-23!358;CL:0002009!1.27e-22!65;CL:0002194!1.70e-21!63;CL:0000576!1.70e-21!63;CL:0000040!1.70e-21!63;CL:0000559!1.70e-21!63;CL:0000738!1.79e-20!140;CL:0000557!3.21e-20!71;CL:0000839!3.34e-20!70;CL:0000219!8.97e-20!390;CL:0002087!1.09e-19!119;CL:0002031!6.52e-19!124;CL:0002057!1.70e-18!42;CL:0000860!3.85e-18!45;CL:0000766!5.43e-18!76;CL:0000988!1.12e-14!182;CL:0000037!1.10e-13!172;CL:0000566!1.10e-13!172;CL:0002032!1.34e-12!165;CL:0000837!1.34e-12!165;CL:0000763!1.90e-11!112;CL:0000049!1.90e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.88e-15;39!CL:0000234;2.88e-15;39!CL:0000860;1.84e-14;33!CL:0002057;1.84e-14;33!CL:0000576;4.35e-11;48!CL:0000766;2.01e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.17e-25,433;CL:0000048,4.26e-25,427;CL:0002320,2.10e-23,361;CL:0000034,7.88e-23,441;CL:0000134,1.60e-22,354;CL:0002009,1.91e-22,61;CL:0000473,2.97e-22,48;CL:0000234,2.97e-22,48;CL:0002194,2.60e-21,59;CL:0000576,2.60e-21,59;CL:0000040,2.60e-21,59;CL:0000559,2.60e-21,59;CL:0000738,5.41e-20,136;CL:0000557,6.13e-20,67;CL:0000839,6.27e-20,66;CL:0000219,2.23e-19,386;CL:0002087,3.12e-19,115;CL:0000860,1.70e-18,42;CL:0002057,1.70e-18,42;CL:0002031,1.90e-18,120;CL:0000766,1.18e-17,72;CL:0000988,3.76e-14,177;CL:0000037,3.20e-13,168;CL:0002032,3.80e-12,161;CL:0000837,3.80e-12,161;CL:0000763,5.12e-11,108;CL:0000049,5.12e-11,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.95e-22!375;UBERON:0002390!2.63e-22!102;UBERON:0003061!2.63e-22!102;UBERON:0002193!7.92e-22!112;UBERON:0003081!3.74e-21!216;UBERON:0002371!4.54e-21!80;UBERON:0002204!7.06e-19!167;UBERON:0004765!1.52e-17!101;UBERON:0001434!1.52e-17!101;UBERON:0001474!2.68e-17!86;UBERON:0002405!3.69e-16!115;UBERON:0000926!5.46e-12!448;UBERON:0004120!5.46e-12!448;UBERON:0006603!5.46e-12!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.88e-22,371;UBERON:0002390,6.64e-22,98;UBERON:0003061,6.64e-22,98;UBERON:0002193,2.16e-21,108;UBERON:0003081,2.73e-21,203;UBERON:0002371,9.54e-21,76;UBERON:0002405,1.10e-19,93;UBERON:0000926,2.69e-19,315;UBERON:0004120,2.69e-19,315;UBERON:0006603,2.69e-19,315;UBERON:0004765,2.56e-18,90;UBERON:0002204,6.68e-18,167;UBERON:0001474,6.61e-17,82;UBERON:0001434,9.26e-17,100 | |||
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| ||
|short_description=p1@CYBASC3 | |||
}} | }} |
Latest revision as of 15:49, 18 September 2015
Short description: | p1@CYBASC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CYBASC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000539128, ENST00000542411, ENST00000545361, ENST00000546151_5end |
EntrezGene: | CYBASC3 |
HGNC: | 23014 |
UniProt: | F5H5Y9F5H684F5GWH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.17e-25 | 433 |
multi fate stem cell | 4.26e-25 | 427 |
connective tissue cell | 2.10e-23 | 361 |
stem cell | 7.88e-23 | 441 |
mesenchymal cell | 1.60e-22 | 354 |
macrophage dendritic cell progenitor | 1.91e-22 | 61 |
defensive cell | 2.97e-22 | 48 |
phagocyte | 2.97e-22 | 48 |
monopoietic cell | 2.60e-21 | 59 |
monocyte | 2.60e-21 | 59 |
monoblast | 2.60e-21 | 59 |
promonocyte | 2.60e-21 | 59 |
leukocyte | 5.41e-20 | 136 |
granulocyte monocyte progenitor cell | 6.13e-20 | 67 |
myeloid lineage restricted progenitor cell | 6.27e-20 | 66 |
motile cell | 2.23e-19 | 386 |
nongranular leukocyte | 3.12e-19 | 115 |
classical monocyte | 1.70e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.70e-18 | 42 |
hematopoietic lineage restricted progenitor cell | 1.90e-18 | 120 |
myeloid leukocyte | 1.18e-17 | 72 |
hematopoietic cell | 3.76e-14 | 177 |
hematopoietic stem cell | 3.20e-13 | 168 |
hematopoietic oligopotent progenitor cell | 3.80e-12 | 161 |
hematopoietic multipotent progenitor cell | 3.80e-12 | 161 |
myeloid cell | 5.12e-11 | 108 |
common myeloid progenitor | 5.12e-11 | 108 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.88e-22 | 371 |
hematopoietic system | 6.64e-22 | 98 |
blood island | 6.64e-22 | 98 |
hemolymphoid system | 2.16e-21 | 108 |
lateral plate mesoderm | 2.73e-21 | 203 |
bone marrow | 9.54e-21 | 76 |
immune system | 1.10e-19 | 93 |
mesoderm | 2.69e-19 | 315 |
mesoderm-derived structure | 2.69e-19 | 315 |
presumptive mesoderm | 2.69e-19 | 315 |
skeletal element | 2.56e-18 | 90 |
musculoskeletal system | 6.68e-18 | 167 |
bone element | 6.61e-17 | 82 |
skeletal system | 9.26e-17 | 100 |